BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0479200 Os07g0479200|AK058326
         (244 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0479200  Similar to SL15-like (Fragment)                     452   e-128

>Os07g0479200 Similar to SL15-like (Fragment)
          Length = 244

 Score =  452 bits (1164), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 226/244 (92%), Positives = 226/244 (92%)

Query: 1   MVAAAGTMELEILGINFGCVLAALADAKIPEKDCLLPLASKLLGYAIVAASTTVKLPQIL 60
           MVAAAGTMELEILGINFGCVLAALADAKIPEKDCLLPLASKLLGYAIVAASTTVKLPQIL
Sbjct: 1   MVAAAGTMELEILGINFGCVLAALADAKIPEKDCLLPLASKLLGYAIVAASTTVKLPQIL 60

Query: 61  KILKHGSVRGLSVASFELEVVGYTIALAYCIHKGLPFSAYGEXXXXXXXXXXXXXXXXXX 120
           KILKHGSVRGLSVASFELEVVGYTIALAYCIHKGLPFSAYGE                  
Sbjct: 61  KILKHGSVRGLSVASFELEVVGYTIALAYCIHKGLPFSAYGELAFLLIQAIILVAIIYYY 120

Query: 121 SPPMGTKTWMKALLYCGLAPTVLGGKIDPALFEVLYASQHAIFFFARLPQIWKNFMNKGT 180
           SPPMGTKTWMKALLYCGLAPTVLGGKIDPALFEVLYASQHAIFFFARLPQIWKNFMNKGT
Sbjct: 121 SPPMGTKTWMKALLYCGLAPTVLGGKIDPALFEVLYASQHAIFFFARLPQIWKNFMNKGT 180

Query: 181 GELSFLTCFMNFAGSIVRVFTSIQEKTPLSVILGSAIGIVMNGTLLGQIVLYQKPAPKKE 240
           GELSFLTCFMNFAGSIVRVFTSIQEKTPLSVILGSAIGIVMNGTLLGQIVLYQKPAPKKE
Sbjct: 181 GELSFLTCFMNFAGSIVRVFTSIQEKTPLSVILGSAIGIVMNGTLLGQIVLYQKPAPKKE 240

Query: 241 KKRD 244
           KKRD
Sbjct: 241 KKRD 244



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.139    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,480,165
Number of extensions: 267309
Number of successful extensions: 488
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 487
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 146
Effective length of database: 11,918,829
Effective search space: 1740149034
Effective search space used: 1740149034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 154 (63.9 bits)