BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0479200 Os07g0479200|AK058326
(244 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G07390.1 | chr4:4195750-4197317 FORWARD LENGTH=236 303 4e-83
AT5G59470.1 | chr5:23978611-23979414 FORWARD LENGTH=240 276 8e-75
>AT4G07390.1 | chr4:4195750-4197317 FORWARD LENGTH=236
Length = 235
Score = 303 bits (777), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 144/223 (64%), Positives = 173/223 (77%)
Query: 10 LEILGINFGCVLAALADAKIPEKDCLLPLASKLLGYAIVAASTTVKLPQILKILKHGSVR 69
++ LGI+ C + +L + PEKDCLLPL SKLLGY +VAAS TVKLPQI+KI++H SVR
Sbjct: 1 MDYLGIDMSCAIGSLRNGDFPEKDCLLPLISKLLGYCLVAASITVKLPQIMKIVQHKSVR 60
Query: 70 GLSVASFELEVVGYTIALAYCIHKGLPFSAYGEXXXXXXXXXXXXXXXXXXSPPMGTKTW 129
GLSV +FELEVVGYTI+LAYC+HKGLPFSA+GE S P+ TW
Sbjct: 61 GLSVVAFELEVVGYTISLAYCLHKGLPFSAFGEMAFLLIQALILVACIYYYSQPVPVTTW 120
Query: 130 MKALLYCGLAPTVLGGKIDPALFEVLYASQHAIFFFARLPQIWKNFMNKGTGELSFLTCF 189
++ LLYC +APTVL G+I+P LFE LYASQHAIF FARLPQIWKNF NK TGELSFLT F
Sbjct: 121 IRPLLYCAVAPTVLAGQINPTLFEALYASQHAIFLFARLPQIWKNFKNKSTGELSFLTFF 180
Query: 190 MNFAGSIVRVFTSIQEKTPLSVILGSAIGIVMNGTLLGQIVLY 232
MNFAGSIVRVFTS+QEK P+S++ G A+G+V NG++L QI+LY
Sbjct: 181 MNFAGSIVRVFTSLQEKAPISILTGFALGVVTNGSILTQILLY 223
>AT5G59470.1 | chr5:23978611-23979414 FORWARD LENGTH=240
Length = 239
Score = 276 bits (706), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 130/224 (58%), Positives = 164/224 (73%)
Query: 10 LEILGINFGCVLAALADAKIPEKDCLLPLASKLLGYAIVAASTTVKLPQILKILKHGSVR 69
++ LGI+ C + +L + + P KDCLLPL SKLLGY +VAAS TVKLPQI+KI+ + SV+
Sbjct: 1 MDYLGIDLSCAIGSLRNGEFPAKDCLLPLISKLLGYFLVAASMTVKLPQIMKIVDNKSVK 60
Query: 70 GLSVASFELEVVGYTIALAYCIHKGLPFSAYGEXXXXXXXXXXXXXXXXXXSPPMGTKTW 129
GLSV +FELEV+GYTI+LAYC++K LPFSA+GE S P+ TW
Sbjct: 61 GLSVVAFELEVIGYTISLAYCLNKDLPFSAFGELAFLLIQALILVACIYYFSQPLSVTTW 120
Query: 130 MKALLYCGLAPTVLGGKIDPALFEVLYASQHAIFFFARLPQIWKNFMNKGTGELSFLTCF 189
+KA+LY +APTV GKIDP LFE LYAS+H IF AR+PQIWKNF NK TG+LSFLTC
Sbjct: 121 VKAILYFAIAPTVFAGKIDPFLFEALYASKHLIFLSARIPQIWKNFRNKSTGQLSFLTCL 180
Query: 190 MNFAGSIVRVFTSIQEKTPLSVILGSAIGIVMNGTLLGQIVLYQ 233
MNF G++ RVFTSIQEK PLS++LG + I NG ++ QI+LY+
Sbjct: 181 MNFGGALARVFTSIQEKAPLSMLLGIVLSIFTNGIIMSQILLYR 224
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.139 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,830,210
Number of extensions: 174963
Number of successful extensions: 367
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 364
Number of HSP's successfully gapped: 2
Length of query: 244
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 148
Effective length of database: 8,474,633
Effective search space: 1254245684
Effective search space used: 1254245684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 110 (47.0 bits)