Os07g0477000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA polymerase Rpb7, N-terminal domain containing protein.
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Os07g0477000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA polymerase Rpb7, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.77 | 0.318 | 11 | 0.359 | 1.48 | 0.779 | -0.137 | -1.25 | 0.121 | 15.5 | 22.4 | 779 | -- | -- |
| 46.57 | 0.318 | 11 | 0.251 | 1.48 | 1.32 | -0.271 | -- | 0.0744 | 15.5 | 20.11 | 725 | -- | -- |
| 45.83 | 0.315 | 11 | 0.362 | 1.48 | 0.777 | -- | -1.28 | 0.121 | 15.5 | 22.4 | 784 | -- | -- |
| 46.79 | 0.319 | 11 | 0.236 | 1.47 | 1.3 | -- | -- | 0.0688 | 15.5 | 20.14 | 736 | -- | -- |
| 161.1 | 0.591 | 10.9 | 0.543 | -- | 1.23 | -- | -1.34 | 0.261 | -- | 28.07 | 1092 | -- | -- |
| 59.31 | 0.361 | 11 | -0.0332 | 1.51 | -- | -0.34 | -- | -0.0433 | 15.3 | -- | -- | -- | -- |
| 59.68 | 0.362 | 11 | -0.0398 | 1.51 | -- | -- | -- | -0.0453 | 15.3 | -- | -- | -- | -- |
| 162.89 | 0.594 | 11 | 0.254 | -- | 1.23 | -- | -- | 0.131 | -- | 32.98 | 1128 | -- | -- |
| 48.06 | 0.323 | 11 | -- | 1.47 | 1.17 | -- | -- | 0.0293 | 15.5 | 20.01 | 730 | -- | -- |
| 189.16 | 0.643 | 11 | -0.104 | -- | -- | -- | -- | -0.0851 | -- | -- | -- | -- | -- |
| 59.72 | 0.361 | 11 | -- | 1.51 | -- | -- | -- | -0.0408 | 15.3 | -- | -- | -- | -- |
| 164.55 | 0.597 | 11 | -- | -- | 1.14 | -- | -- | 0.0885 | -- | 38.71 | 1132 | -- | -- |
| 189.45 | 0.642 | 11 | -- | -- | -- | -- | -- | -0.0735 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.00 | temperature | 15.0 | 270 | > th | dose independent | rect. | 13 | 17 |
| 2 | 36.30 | temperature | 15.0 | 270 | > th | dose independent | rect. | 12 | 19 |
| 6 | 37.25 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 17 |
| 10 | 37.70 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 11 | 9 |
| 11 | 37.87 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 9 | 18 |
| 15 | 37.93 | radiation | 20.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 16 | 37.93 | temperature | 15.0 | 270 | > th | dose independent | rect. | 12 | 8 |
| 18 | 37.94 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 18 |
| 22 | 38.01 | temperature | 15.0 | 270 | > th | dose independent | rect. | 10 | 22 |
| 23 | 38.02 | humidity | 70.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 27 | 38.16 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 28 | 38.16 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 30 | 38.16 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 31 | 38.16 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 33 | 38.16 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 34 | 38.16 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 36 | 38.16 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 18 |
| 38 | 38.22 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 6 |
| 39 | 38.22 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 6 |
| 41 | 38.27 | wind | 1.0 | 270 | > th | dose independent | rect. | 12 | 8 |
| 44 | 38.43 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 1 | 6 |
| 48 | 38.65 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 18 |
| 49 | 38.65 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 18 |
| 51 | 38.66 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 12 | 19 |
| 54 | 38.72 | temperature | 10.0 | 270 | > th | dose independent | rect. | 20 | 16 |
| 55 | 38.72 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 20 | 16 |
| 57 | 38.80 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 20 | 16 |
| 58 | 38.80 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 20 | 16 |
| 61 | 38.84 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 8 |
| 62 | 38.84 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 8 |
| 64 | 38.85 | temperature | 30.0 | 270 | < th | dose independent | rect. | 20 | 16 |
| 69 | 38.90 | wind | 9.0 | 270 | < th | dose independent | rect. | 20 | 16 |
| 70 | 38.90 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 1 | 6 |
| 73 | 39.02 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 8 |
| 75 | 39.12 | temperature | 15.0 | 10 | > th | dose independent | rect. | 15 | 18 |
| 80 | 39.21 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 96 | 39.40 | wind | 9.0 | 270 | < th | dose independent | rect. | 12 | 8 |
| 99 | 39.42 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 18 |
| 116 | 39.50 | humidity | 50.0 | 270 | > th | dose independent | rect. | 20 | 16 |
| 128 | 39.60 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 12 | 19 |
| 129 | 39.60 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 6 |
| 132 | 39.63 | radiation | 10.0 | 270 | < th | dose independent | rect. | 2 | 4 |
| 136 | 39.65 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 12 | 8 |
| 138 | 39.66 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 19 |
| 140 | 39.69 | wind | 7.0 | 270 | < th | dose independent | rect. | 18 | 8 |
| 144 | 39.74 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 7 |
| 145 | 39.74 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 7 |
| 146 | 39.74 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 7 |
| 149 | 39.76 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 15 | 17 |
| 152 | 39.78 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 20 |
| 153 | 39.81 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 7 |
| 154 | 39.81 | temperature | 15.0 | 270 | > th | dose independent | rect. | 2 | 16 |
| 155 | 39.81 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 7 |
| 156 | 39.83 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 2 | 4 |
| 178 | 39.98 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 2 | 4 |
| 181 | 39.99 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 7 |
| 188 | 40.01 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 18 | 8 |
| 189 | 40.02 | wind | 9.0 | 270 | < th | dose independent | rect. | 2 | 4 |
| 190 | 40.02 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 4 |
| 192 | 40.02 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 4 |
| 193 | 40.02 | humidity | 50.0 | 270 | > th | dose independent | rect. | 2 | 4 |
| 196 | 40.02 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 2 | 4 |
| 202 | 40.02 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 20 |
| 213 | 40.10 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 4 |
| 214 | 40.10 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 4 |
| 218 | 40.13 | temperature | 15.0 | 30 | > th | dose independent | rect. | 12 | 21 |
| 222 | 40.15 | temperature | 30.0 | 270 | < th | dose independent | rect. | 7 | 5 |
| 227 | 40.18 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 12 | 8 |
| 228 | 40.18 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 17 |
| 230 | 40.18 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 17 |
| 232 | 40.19 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 5 |
| 233 | 40.19 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 5 |
| 234 | 40.19 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 5 |
| 237 | 40.19 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 18 | 8 |
| 261 | 40.24 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 5 |
| 263 | 40.24 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 5 |
| 282 | 40.30 | radiation | 1.0 | 270 | < th | dose independent | rect. | 18 | 8 |
| 294 | 40.36 | wind | 7.0 | 10 | < th | dose independent | rect. | 3 | 6 |
| 298 | 40.38 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 5 |
| 308 | 40.39 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 2 | 4 |
| 321 | 40.44 | temperature | 10.0 | 10 | > th | dose independent | rect. | 3 | 6 |
| 323 | 40.44 | temperature | 30.0 | 10 | < th | dose independent | rect. | 3 | 6 |
| 324 | 40.44 | humidity | 50.0 | 10 | > th | dose independent | rect. | 3 | 6 |
| 326 | 40.44 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 3 | 6 |
| 327 | 40.44 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 3 | 6 |
| 328 | 40.44 | temperature | 10.0 | 10 | > th | dose independent | rect. | 9 | 18 |
| 330 | 40.45 | radiation | 40.0 | 10 | < th | dose independent | rect. | 3 | 6 |
| 332 | 40.45 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 17 |
| 356 | 40.50 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 3 | 6 |
| 363 | 40.50 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 19 |
| 365 | 40.50 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 3 | 6 |
| 367 | 40.50 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 19 |
| 387 | 40.53 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 18 |
| 393 | 40.55 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 20 |
| 394 | 40.55 | wind | 9.0 | 270 | < th | dose dependent | rect. | 1 | 6 |
| 396 | 40.55 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 20 |
| 429 | 40.64 | humidity | 60.0 | 270 | > th | dose independent | rect. | 18 | 8 |
| 435 | 40.65 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 16 |
| 440 | 40.65 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 16 |
| 442 | 40.67 | temperature | 30.0 | 270 | < th | dose independent | rect. | 18 | 8 |
| 444 | 40.67 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 9 | 18 |
| 449 | 40.67 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 9 | 18 |
| 465 | 40.73 | temperature | 10.0 | 270 | > th | dose independent | rect. | 18 | 8 |
| 471 | 40.73 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 2 | 16 |
| 474 | 40.74 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 18 | 8 |
| 475 | 40.74 | wind | 9.0 | 10 | < th | dose independent | rect. | 9 | 18 |
| 483 | 40.76 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 6 |
| 486 | 40.76 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 4 | 6 |
| 487 | 40.76 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 4 | 6 |
| 488 | 40.76 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 18 |
| 493 | 40.77 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 6 | 19 |
| 513 | 40.82 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 514 | 40.82 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 516 | 40.82 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 517 | 40.82 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 520 | 40.82 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 526 | 40.82 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 22 |
| 533 | 40.85 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 5 |
| 536 | 40.85 | wind | 9.0 | 270 | < th | dose independent | rect. | 12 | 19 |
| 554 | 40.87 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 18 | 8 |
| 555 | 40.87 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 18 | 8 |
| 567 | 40.89 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 7 |
| 580 | 40.94 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 9 | 18 |
| 584 | 40.95 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 5 |
| 624 | 41.07 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 18 |
| 651 | 41.18 | wind | 1.0 | 270 | > th | dose independent | rect. | 6 | 7 |
| 661 | 41.21 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 18 |
| 689 | 41.29 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 18 |
| 696 | 41.31 | radiation | 1.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 698 | 41.31 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 13 | 17 |
| 701 | 41.32 | wind | 9.0 | 270 | < th | dose independent | rect. | 2 | 16 |
| 709 | 41.35 | radiation | 40.0 | 270 | < th | dose independent | rect. | 14 | 16 |
| 717 | 41.38 | humidity | 90.0 | 270 | < th | dose independent | rect. | 12 | 8 |
| 730 | 41.41 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 12 | 19 |
| 741 | 41.42 | wind | 9.0 | 30 | < th | dose dependent | rect. | 3 | 6 |
| 770 | 41.45 | temperature | 30.0 | 270 | < th | dose independent | rect. | 7 | 18 |
| 791 | 41.50 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 1 | 6 |
| 795 | 41.52 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 3 | 6 |
| 798 | 41.53 | radiation | 40.0 | 90 | < th | dose independent | rect. | 13 | 19 |
| 810 | 41.57 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 5 |
| 813 | 41.58 | wind | 1.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 829 | 41.62 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 20 | 16 |
| 853 | 41.69 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 20 | 16 |
| 895 | 41.79 | wind | 1.0 | 270 | > th | dose independent | rect. | 20 | 16 |
| 912 | 41.85 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 12 | 10 |
| 966 | 41.94 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 12 | 21 |
| 971 | 41.95 | wind | 9.0 | 270 | < th | dose dependent | rect. | 17 | 8 |