BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0477000 Os07g0477000|AK059952
(202 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0477000 RNA polymerase Rpb7, N-terminal domain contain... 328 2e-90
Os03g0609100 87 9e-18
Os08g0290900 RNA polymerase III, subunit Rpc25 domain conta... 71 4e-13
>Os07g0477000 RNA polymerase Rpb7, N-terminal domain containing protein
Length = 202
Score = 328 bits (840), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 164/177 (92%), Positives = 164/177 (92%)
Query: 1 MFVLSQIEHNLPMPPHLLSRPLVDAIKAELERLFLDKVVANLGLCVSVYDIRSVEGGFIF 60
MFVLSQIEHNLPMPPHLLSRPLVDAIKAELERLFLDKVVANLGLCVSVYDIRSVEGGFIF
Sbjct: 1 MFVLSQIEHNLPMPPHLLSRPLVDAIKAELERLFLDKVVANLGLCVSVYDIRSVEGGFIF 60
Query: 61 PGEGCSTYKVSFRLLMFRPFVGEVLVGKISGYDEKGLHVSLDFFSDISIPGHLMQYGTAR 120
PGEGCSTYKVSFRLLMFRPFVGEVLVGKISGYDEKGLHVSLDFFSDISIPGHLMQYGTAR
Sbjct: 61 PGEGCSTYKVSFRLLMFRPFVGEVLVGKISGYDEKGLHVSLDFFSDISIPGHLMQYGTAR 120
Query: 121 ALDGRWMLKTXXXXXXXXXXXXXIRFLVSSIKYPPIPVEQKETDRAFAPMQIIGSIK 177
ALDGRWMLKT IRFLVSSIKYPPIPVEQKETDRAFAPMQIIGSIK
Sbjct: 121 ALDGRWMLKTEDGDELYLDLDDEIRFLVSSIKYPPIPVEQKETDRAFAPMQIIGSIK 177
>Os03g0609100
Length = 464
Score = 87.0 bits (214), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 40/42 (95%), Positives = 41/42 (97%)
Query: 78 RPFVGEVLVGKISGYDEKGLHVSLDFFSDISIPGHLMQYGTA 119
RPFVGEVLVGKISGYDEKGLHVSLDFF+DI IPGHLMQYGTA
Sbjct: 285 RPFVGEVLVGKISGYDEKGLHVSLDFFNDICIPGHLMQYGTA 326
>Os08g0290900 RNA polymerase III, subunit Rpc25 domain containing protein
Length = 89
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/32 (100%), Positives = 32/32 (100%)
Query: 99 VSLDFFSDISIPGHLMQYGTARALDGRWMLKT 130
VSLDFFSDISIPGHLMQYGTARALDGRWMLKT
Sbjct: 7 VSLDFFSDISIPGHLMQYGTARALDGRWMLKT 38
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.144 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,609,664
Number of extensions: 193198
Number of successful extensions: 531
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 531
Number of HSP's successfully gapped: 3
Length of query: 202
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 106
Effective length of database: 12,023,257
Effective search space: 1274465242
Effective search space used: 1274465242
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 153 (63.5 bits)