BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0477000 Os07g0477000|AK059952
         (202 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G06790.1  | chr1:2087645-2089287 FORWARD LENGTH=205            165   2e-41

>AT1G06790.1 | chr1:2087645-2089287 FORWARD LENGTH=205
          Length = 204

 Score =  165 bits (417), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 85/183 (46%), Positives = 116/183 (63%), Gaps = 7/183 (3%)

Query: 1   MFVLSQIEHNLPMPPHLLSRPLVDAIKAELERLFLDKVVANLGLCVSVYDIRSVEGGFIF 60
           MF LS++EH+L +PPHLL+ PL DAIK+ L+ +FLDKV+A+LGLCVS+YDI+SVEGGF+ 
Sbjct: 1   MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVL 60

Query: 61  PGEGCSTYKVSFRLLMFRPFVGEVLVGKISGYDEKGLHVSLDFFSDISIPGHLMQYGTAR 120
           PG+G +TYKV  R+++FRPFVGEV+  K    D  GL ++L FF DI +P  LM      
Sbjct: 61  PGDGAATYKVGLRIVVFRPFVGEVIAAKFKESDANGLRLTLGFFDDIYVPAPLMPKPNRC 120

Query: 121 ALDGR------WMLK-TXXXXXXXXXXXXXIRFLVSSIKYPPIPVEQKETDRAFAPMQII 173
             D        W+ +               I+F V SI YP +P E+ E  + FAPM + 
Sbjct: 121 EPDPYNRKQMIWVWEYGEPKEDYIVDDACQIKFRVESISYPSVPTERAEDAKPFAPMVVT 180

Query: 174 GSI 176
           G++
Sbjct: 181 GNM 183



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.326    0.144    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,552,144
Number of extensions: 127173
Number of successful extensions: 313
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 313
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 108
Effective length of database: 8,529,465
Effective search space: 921182220
Effective search space used: 921182220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 109 (46.6 bits)