Os07g0476200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide region domain containing protein.
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Os07g0476200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 9.85 | 0.147 | 10.3 | 0.786 | 0.0581 | -0.569 | 0.116 | 1.36 | 0.235 | 10.2 | 21.23 | 1275 | -- | -- |
| 10.69 | 0.153 | 10.3 | 0.393 | 0.361 | -0.828 | 0.119 | -- | 0.14 | 13.7 | 16.08 | 1212 | -- | -- |
| 9.89 | 0.146 | 10.3 | 0.776 | 0.0649 | -0.556 | -- | 1.3 | 0.231 | 10.6 | 21.29 | 1318 | -- | -- |
| 10.73 | 0.154 | 10.3 | 0.399 | 0.357 | -0.887 | -- | -- | 0.14 | 13.7 | 13.02 | 1074 | -- | -- |
| 10.03 | 0.147 | 10.3 | 0.767 | -- | -0.585 | -- | 1.31 | 0.228 | -- | 21.07 | 1193 | -- | -- |
| 18.3 | 0.201 | 10.3 | 0.226 | 0.116 | -- | 0.0332 | -- | 0.0153 | 12.1 | -- | -- | -- | -- |
| 18.3 | 0.2 | 10.3 | 0.227 | 0.116 | -- | -- | -- | 0.0154 | 12.2 | -- | -- | -- | -- |
| 11.02 | 0.155 | 10.3 | 0.411 | -- | -0.622 | -- | -- | 0.127 | -- | 16.76 | 1057 | -- | -- |
| 14.44 | 0.178 | 10.3 | -- | 0.309 | -0.561 | -- | -- | 0.073 | 13.6 | 20.43 | 959 | -- | -- |
| 19.15 | 0.204 | 10.3 | 0.223 | -- | -- | -- | -- | 0.0137 | -- | -- | -- | -- | -- |
| 19.66 | 0.207 | 10.3 | -- | 0.113 | -- | -- | -- | -0.00986 | 12.1 | -- | -- | -- | -- |
| 14.99 | 0.18 | 10.3 | -- | -- | -0.414 | -- | -- | 0.061 | -- | 20.6 | 1054 | -- | -- |
| 20.47 | 0.211 | 10.3 | -- | -- | -- | -- | -- | -0.0111 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 9.82 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 16 |
| 4 | 9.83 | temperature | 20 | 1440 | > th | dose dependent | sin | 14 | NA |
| 18 | 9.85 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 50 | 9.92 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 18 |
| 87 | 9.98 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 88 | 9.99 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 94 | 9.99 | temperature | 20 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 104 | 10.00 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 19 |
| 120 | 10.01 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 126 | 10.01 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 23 |
| 176 | 10.06 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 204 | 10.08 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 366 | 10.26 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 8 |
| 391 | 10.29 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 7 |
| 409 | 10.30 | temperature | 20 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 421 | 10.31 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 422 | 10.31 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 440 | 10.33 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 447 | 10.34 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 483 | 10.37 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 4 |
| 558 | 10.42 | temperature | 25 | 1440 | > th | dose independent | sin | 16 | NA |
| 585 | 10.43 | temperature | 25 | 1440 | < th | dose independent | sin | 16 | NA |
| 684 | 10.46 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 747 | 10.47 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 23 |