BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0476200 Os07g0476200|AK067379
         (629 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0476200  Tetratricopeptide region domain containing pro...  1170   0.0  

>Os07g0476200 Tetratricopeptide region domain containing protein
          Length = 629

 Score = 1170 bits (3027), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 572/629 (90%), Positives = 572/629 (90%)

Query: 1   KHSQARNLLKKAGEKIPIELLNGIGLLHFEKGELEMAEQSFKEALGDGFWXXXXXXXXXX 60
           KHSQARNLLKKAGEKIPIELLNGIGLLHFEKGELEMAEQSFKEALGDGFW          
Sbjct: 1   KHSQARNLLKKAGEKIPIELLNGIGLLHFEKGELEMAEQSFKEALGDGFWVSIIDGSVGS 60

Query: 61  XXXNWSIQYRDQSFFQQLEEEGTPLELPWDKVTTLFNYARLFEELHDTVKASLFYRLIIF 120
              NWSIQYRDQSFFQQLEEEGTPLELPWDKVTTLFNYARLFEELHDTVKASLFYRLIIF
Sbjct: 61  SVVNWSIQYRDQSFFQQLEEEGTPLELPWDKVTTLFNYARLFEELHDTVKASLFYRLIIF 120

Query: 121 KYPDYIDTYLRLAAIAKEKNNLQLSIELIGDALKIDDKYPNALSMLGSLELQGDETWLTA 180
           KYPDYIDTYLRLAAIAKEKNNLQLSIELIGDALKIDDKYPNALSMLGSLELQGDETWLTA
Sbjct: 121 KYPDYIDTYLRLAAIAKEKNNLQLSIELIGDALKIDDKYPNALSMLGSLELQGDETWLTA 180

Query: 181 KEHFREAKDASEGKDTYSMLQLGNWNYFAANRPEKKAPKFEATHREKAKELYSNVLKQHH 240
           KEHFREAKDASEGKDTYSMLQLGNWNYFAANRPEKKAPKFEATHREKAKELYSNVLKQHH
Sbjct: 181 KEHFREAKDASEGKDTYSMLQLGNWNYFAANRPEKKAPKFEATHREKAKELYSNVLKQHH 240

Query: 241 GNMFAANGIGILYAEKAQWDIAKELFTQVHEAASGSIFVQMPDVWINLAHIYFAQGFFQQ 300
           GNMFAANGIGILYAEKAQWDIAKELFTQVHEAASGSIFVQMPDVWINLAHIYFAQGFFQQ
Sbjct: 241 GNMFAANGIGILYAEKAQWDIAKELFTQVHEAASGSIFVQMPDVWINLAHIYFAQGFFQQ 300

Query: 301 AVKMYQNCLRKFFYNTDATILLYLARTHYEAEQWQDCRKTLLRAIHLAPSNYLLRFNVGV 360
           AVKMYQNCLRKFFYNTDATILLYLARTHYEAEQWQDCRKTLLRAIHLAPSNYLLRFNVGV
Sbjct: 301 AVKMYQNCLRKFFYNTDATILLYLARTHYEAEQWQDCRKTLLRAIHLAPSNYLLRFNVGV 360

Query: 361 SMQKFSASTLQKTKRTVDEVRATVSELQNAIRVFSLLSVASTYHSHGFDERKIETHIEYC 420
           SMQKFSASTLQKTKRTVDEVRATVSELQNAIRVFSLLSVASTYHSHGFDERKIETHIEYC
Sbjct: 361 SMQKFSASTLQKTKRTVDEVRATVSELQNAIRVFSLLSVASTYHSHGFDERKIETHIEYC 420

Query: 421 KHLLDAAKVHRDXXXXXXXXNKQKMEVARQIALADEARRKAEEQRKAQLERRKQEDELKQ 480
           KHLLDAAKVHRD        NKQKMEVARQIALADEARRKAEEQRKAQLERRKQEDELKQ
Sbjct: 421 KHLLDAAKVHRDAAEQAEQQNKQKMEVARQIALADEARRKAEEQRKAQLERRKQEDELKQ 480

Query: 481 VMQQEQHFERVKEQWKTSSNTPGKRKDRSKHXXXXXXXXXXXXXXXXXXXXQKTKAHYGX 540
           VMQQEQHFERVKEQWKTSSNTPGKRKDRSKH                    QKTKAHYG 
Sbjct: 481 VMQQEQHFERVKEQWKTSSNTPGKRKDRSKHEDEEGGGEKRRKKGGRRRKDQKTKAHYGE 540

Query: 541 XXXXXXXXXXXXXXXYANTARSNDGGDSEKAPGHLLAAAGLEDSDAEEDDMGHPQSAIER 600
                          YANTARSNDGGDSEKAPGHLLAAAGLEDSDAEEDDMGHPQSAIER
Sbjct: 541 EEEDEYRDEPEAEDDYANTARSNDGGDSEKAPGHLLAAAGLEDSDAEEDDMGHPQSAIER 600

Query: 601 KRRAWSESEDDEPVQRPVQPSAGENDLSD 629
           KRRAWSESEDDEPVQRPVQPSAGENDLSD
Sbjct: 601 KRRAWSESEDDEPVQRPVQPSAGENDLSD 629



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.131    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,869,311
Number of extensions: 739999
Number of successful extensions: 3317
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 3313
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 522
Effective length of database: 11,448,903
Effective search space: 5976327366
Effective search space used: 5976327366
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 159 (65.9 bits)