BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0476200 Os07g0476200|AK067379
(629 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G06210.1 | chr2:2429108-2436588 REVERSE LENGTH=1092 685 0.0
>AT2G06210.1 | chr2:2429108-2436588 REVERSE LENGTH=1092
Length = 1091
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/505 (63%), Positives = 400/505 (79%), Gaps = 2/505 (0%)
Query: 5 ARNLLKKAGEKIPIELLNGIGLLHFEKGELEMAEQSFKEALGDGFWXXXXXXXXXXXXXN 64
AR L+KK G+++PIE+LN IG LHFE+ E E A ++FKEALGDG W
Sbjct: 436 ARTLMKKGGQEVPIEVLNDIGALHFEREEFESALENFKEALGDGIWISFLDEKENLEQTG 495
Query: 65 WSI-QYRDQSFFQQLEEEGTPLELPWDKVTTLFNYARLFEELHDTVKASLFYRLIIFKYP 123
S+ Y+D F +L E G +++PW+KVTTLFN ARL E++H T A+ YRLI+FKYP
Sbjct: 496 VSVLGYKDTGIFHRLIESGHSVDVPWNKVTTLFNLARLLEQIHKTEAATFMYRLILFKYP 555
Query: 124 DYIDTYLRLAAIAKEKNNLQLSIELIGDALKIDDKYPNALSMLGSLELQGDETWLTAKEH 183
YID YLRLAA AK +NNL L+IEL+ +ALK+DDK PNALS+LG LEL+ D+ W+ AKE
Sbjct: 556 GYIDAYLRLAASAKAQNNLPLAIELVNEALKVDDKNPNALSLLGELELKNDD-WVKAKET 614
Query: 184 FREAKDASEGKDTYSMLQLGNWNYFAANRPEKKAPKFEATHREKAKELYSNVLKQHHGNM 243
FR A DA++GKD+Y++L LGNWNYFAA R EK+ PK EATH EKAKELY+ VL QH+ NM
Sbjct: 615 FRAANDATDGKDSYAILSLGNWNYFAAMRNEKRNPKLEATHLEKAKELYTKVLTQHNSNM 674
Query: 244 FAANGIGILYAEKAQWDIAKELFTQVHEAASGSIFVQMPDVWINLAHIYFAQGFFQQAVK 303
+AANG GI+ AEK Q+DIAK++FTQV EAASGS+F+QMPDVW+NLAH+YFAQG F VK
Sbjct: 675 YAANGSGIVLAEKGQFDIAKDVFTQVQEAASGSVFLQMPDVWVNLAHVYFAQGNFALTVK 734
Query: 304 MYQNCLRKFFYNTDATILLYLARTHYEAEQWQDCRKTLLRAIHLAPSNYLLRFNVGVSMQ 363
MYQNCLRKFFYNTD+ ILLYLARTHYEAEQWQ+C+KTLLRAIHL PSNY RF++G MQ
Sbjct: 735 MYQNCLRKFFYNTDSQILLYLARTHYEAEQWQECKKTLLRAIHLTPSNYTFRFDLGAVMQ 794
Query: 364 KFSASTLQKTKRTVDEVRATVSELQNAIRVFSLLSVASTYHSHGFDERKIETHIEYCKHL 423
K S+STLQK KRT DEVR+TV+E +NA+RVF+ LS AS H HGFD +KI+TH++YC HL
Sbjct: 795 KSSSSTLQKKKRTADEVRSTVAEAENAVRVFTQLSAASDLHVHGFDSKKIQTHVQYCSHL 854
Query: 424 LDAAKVHRDXXXXXXXXNKQKMEVARQIALADEARRKAEEQRKAQLERRKQEDELKQVMQ 483
L+AAKVHR+ N+Q++EVARQ ALA+EARRKAEEQRK QLE+RKQE+EL+++ Q
Sbjct: 855 LEAAKVHREAAEQEELQNRQRLEVARQAALAEEARRKAEEQRKYQLEKRKQEEELRRLKQ 914
Query: 484 QEQHFERVKEQWKTSSNTPGKRKDR 508
+E+ F+R+KEQWK+S+ KRKDR
Sbjct: 915 EEEKFQRIKEQWKSSTPGSNKRKDR 939
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.131 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,241,889
Number of extensions: 486361
Number of successful extensions: 2425
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2422
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 524
Effective length of database: 8,227,889
Effective search space: 4311413836
Effective search space used: 4311413836
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 115 (48.9 bits)