Os07g0471100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nuclear protein SET domain containing protein.
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Os07g0471100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nuclear protein SET domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 65.63 | 0.381 | 7.07 | 0.74 | 0.0845 | 1.17 | -0.682 | -1.36 | 0.531 | 9.26 | 28.3 | 8 | -- | -- |
| 67.66 | 0.383 | 7.1 | 0.546 | 0.0595 | 1.17 | -0.78 | -- | 0.469 | 6.95 | 27.51 | 29 | -- | -- |
| 66.77 | 0.381 | 7.07 | 0.679 | 0.0922 | 1.25 | -- | -0.982 | 0.53 | 12.9 | 28 | 53 | -- | -- |
| 68.29 | 0.385 | 7.09 | 0.515 | 0.0862 | 1.27 | -- | -- | 0.499 | 12.9 | 27.67 | 52 | -- | -- |
| 67 | 0.381 | 7.07 | 0.678 | -- | 1.18 | -- | -1.05 | 0.528 | -- | 27.79 | 70 | -- | -- |
| 90.71 | 0.447 | 7.15 | 0.197 | 0.302 | -- | -0.237 | -- | 0.22 | 3.13 | -- | -- | -- | -- |
| 90.87 | 0.446 | 7.15 | 0.202 | 0.3 | -- | -- | -- | 0.222 | 2.84 | -- | -- | -- | -- |
| 68.61 | 0.386 | 7.09 | 0.491 | -- | 1.22 | -- | -- | 0.489 | -- | 27.46 | 58 | -- | -- |
| 74.42 | 0.404 | 7.11 | -- | 0.0709 | 1.05 | -- | -- | 0.399 | 9.23 | 27.7 | 25 | -- | -- |
| 96.07 | 0.458 | 7.15 | 0.215 | -- | -- | -- | -- | 0.23 | -- | -- | -- | -- | -- |
| 91.94 | 0.449 | 7.16 | -- | 0.304 | -- | -- | -- | 0.199 | 2.85 | -- | -- | -- | -- |
| 74.64 | 0.402 | 7.11 | -- | -- | 1.05 | -- | -- | 0.401 | -- | 27.54 | 52 | -- | -- |
| 97.29 | 0.46 | 7.16 | -- | -- | -- | -- | -- | 0.206 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 63.38 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 21 | 64.68 | temperature | 15 | 720 | > th | dose dependent | rect. | 9 | 17 |
| 32 | 64.82 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 65 | 65.13 | temperature | 10 | 720 | > th | dose dependent | sin | 19 | NA |
| 66 | 65.13 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 16 |
| 115 | 65.57 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 14 |
| 125 | 65.64 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 128 | 65.66 | temperature | 30 | 720 | < th | dose dependent | sin | 19 | NA |
| 131 | 65.68 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 158 | 65.85 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 177 | 65.96 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 186 | 66.00 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 219 | 66.19 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 254 | 66.31 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 277 | 66.44 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 305 | 66.54 | wind | 7 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 318 | 66.57 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 325 | 66.59 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 326 | 66.60 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 342 | 66.68 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 351 | 66.71 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 437 | 66.97 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 458 | 67.04 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 534 | 67.29 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 14 |
| 555 | 67.35 | temperature | 30 | 1440 | < th | dose dependent | rect. | 9 | 10 |
| 641 | 67.58 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 16 |
| 668 | 67.63 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 669 | 67.63 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 671 | 67.64 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 703 | 67.68 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 720 | 67.71 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 747 | 67.75 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 765 | 67.80 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 10 |
| 778 | 67.82 | humidity | 60 | 14400 | < th | dose dependent | rect. | 16 | 17 |
| 779 | 67.82 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 21 |
| 789 | 67.85 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 4 |
| 795 | 67.86 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 7 |
| 810 | 67.88 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 13 |
| 821 | 67.89 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 834 | 67.91 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 852 | 67.94 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 18 |
| 860 | 67.96 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 14 |
| 861 | 67.96 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 862 | 67.97 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 12 |
| 880 | 67.98 | humidity | 50 | 14400 | < th | dose dependent | rect. | 16 | 19 |
| 882 | 67.99 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 896 | 68.01 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 19 |
| 913 | 68.04 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 4 |
| 944 | 68.08 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 961 | 68.12 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |