BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0471100 Os07g0471100|AK103840
         (479 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0471100  Nuclear protein SET domain containing protein       893   0.0  

>Os07g0471100 Nuclear protein SET domain containing protein
          Length = 479

 Score =  893 bits (2308), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/479 (91%), Positives = 439/479 (91%)

Query: 1   MEALLRWAAELGVXXXXXXXXXXXCLGRSVLIADFPXXXXXXXXXXXXXXXXELVLRAPR 60
           MEALLRWAAELGV           CLGRSVLIADFP                ELVLRAPR
Sbjct: 1   MEALLRWAAELGVSDSPSAPSPSSCLGRSVLIADFPDAGGRGLAAARDLRRGELVLRAPR 60

Query: 61  AALLTSGRVMDDDPRIASSVASHLPRLSSVQTLIICLLSEVGKGKSSNWYLYLSQLPSYY 120
           AALLTSGRVMDDDPRIASSVASHLPRLSSVQTLIICLLSEVGKGKSSNWYLYLSQLPSYY
Sbjct: 61  AALLTSGRVMDDDPRIASSVASHLPRLSSVQTLIICLLSEVGKGKSSNWYLYLSQLPSYY 120

Query: 121 TILATFNDFETEALQVDEAIWVAQKALRGIRSDWEEATPLMKGLGFKPKLLMFKSWIWAF 180
           TILATFNDFETEALQVDEAIWVAQKALRGIRSDWEEATPLMKGLGFKPKLLMFKSWIWAF
Sbjct: 121 TILATFNDFETEALQVDEAIWVAQKALRGIRSDWEEATPLMKGLGFKPKLLMFKSWIWAF 180

Query: 181 ATVSSRTLHIAWDDAGCLCPIGDLFNYAAPXXXXXXXXXXXXXMMHQETNKMLDQTDFDS 240
           ATVSSRTLHIAWDDAGCLCPIGDLFNYAAP             MMHQETNKMLDQTDFDS
Sbjct: 181 ATVSSRTLHIAWDDAGCLCPIGDLFNYAAPNDDNSSTDEDRDDMMHQETNKMLDQTDFDS 240

Query: 241 SEKLTDGGYEDVNEYRLYARKRYRKGEQVLLAYGTYTNLELLEHYGFLLGENPNEKIYIP 300
           SEKLTDGGYEDVNEYRLYARKRYRKGEQVLLAYGTYTNLELLEHYGFLLGENPNEKIYIP
Sbjct: 241 SEKLTDGGYEDVNEYRLYARKRYRKGEQVLLAYGTYTNLELLEHYGFLLGENPNEKIYIP 300

Query: 301 LDLDLCMIGSWPRDSLYILPNGHPSFALLCALRLWTTPRNRRKALSHQIYSGSLLSVENE 360
           LDLDLCMIGSWPRDSLYILPNGHPSFALLCALRLWTTPRNRRKALSHQIYSGSLLSVENE
Sbjct: 301 LDLDLCMIGSWPRDSLYILPNGHPSFALLCALRLWTTPRNRRKALSHQIYSGSLLSVENE 360

Query: 361 LEILKWLVKKCKETLQQLPTTIEFDDNLLVLLCKLQNSTSCITEMNRSIFEQEFAPFFRF 420
           LEILKWLVKKCKETLQQLPTTIEFDDNLLVLLCKLQNSTSCITEMNRSIFEQEFAPFFRF
Sbjct: 361 LEILKWLVKKCKETLQQLPTTIEFDDNLLVLLCKLQNSTSCITEMNRSIFEQEFAPFFRF 420

Query: 421 HGFKLDCSIHSKLPVRLLRSLERWGLAVQWRCNYKRTLTKCIVHCKSLVHELSLQQNQQ 479
           HGFKLDCSIHSKLPVRLLRSLERWGLAVQWRCNYKRTLTKCIVHCKSLVHELSLQQNQQ
Sbjct: 421 HGFKLDCSIHSKLPVRLLRSLERWGLAVQWRCNYKRTLTKCIVHCKSLVHELSLQQNQQ 479



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.137    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,116,906
Number of extensions: 598217
Number of successful extensions: 1110
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1109
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 374
Effective length of database: 11,553,331
Effective search space: 4320945794
Effective search space used: 4320945794
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 158 (65.5 bits)