BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0471100 Os07g0471100|AK103840
         (479 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G17240.1  | chr5:5666854-5668849 FORWARD LENGTH=492            389   e-108

>AT5G17240.1 | chr5:5666854-5668849 FORWARD LENGTH=492
          Length = 491

 Score =  389 bits (1000), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/486 (43%), Positives = 294/486 (60%), Gaps = 14/486 (2%)

Query: 1   MEALLRWAAELGVXXXXXXXX-XXXCLGRSVLIADFPXXXXXXXXXXXXXXXXELVLRAP 59
           ME  LRWAAE+G+            CLG S+ ++DFP                ELVL+ P
Sbjct: 8   METFLRWAAEIGISDSIDSSRFRDSCLGHSLSVSDFPDAGGRGLGAARELKKGELVLKVP 67

Query: 60  RAALLTSGRVMDDDPRIASSVASHLPRLSSVQTLIICLLSEVGKGKSSNWYLYLSQLPSY 119
           R AL+T+  ++  D +++ +V  H   LSS Q L +CLL E+ K K S WY YL  +P  
Sbjct: 68  RKALMTTESIIAKDLKLSDAVNLH-NSLSSTQILSVCLLYEMSKEKKSFWYPYLFHIPRD 126

Query: 120 YTILATFNDFETEALQVDEAIWVAQKALRGIRSDWEEATPLMKGLGFKPKLLMFKSWIWA 179
           Y +LATF +FE +ALQV++A+W  +KA    +S+W+EA  LMK L  KPK   F++W+WA
Sbjct: 127 YDLLATFGNFEKQALQVEDAVWATEKATAKCQSEWKEAGSLMKELELKPKFRSFQAWLWA 186

Query: 180 FATVSSRTLHIAWDDAGCLCPIGDLFNYAAPXXXXXXXXXXXXXMMHQETNKMLDQTDFD 239
            AT+SSRTLH+ WD AGCLCP+GDLFNY AP                +E   +++     
Sbjct: 187 SATISSRTLHVPWDSAGCLCPVGDLFNYDAPGDYSNTPQGPESANNVEEAGLVVET---- 242

Query: 240 SSEKLTDGGY-EDVNEYRLYARKRYRKGEQVLLAYGTYTNLELLEHYGFLLGENPNEKIY 298
            SE+LTDGG+ EDVN Y LYAR+ Y+ GEQVLL YGTYTNLELLEHYGF+L EN N+K++
Sbjct: 243 HSERLTDGGFEEDVNAYCLYARRNYQLGEQVLLCYGTYTNLELLEHYGFMLEENSNDKVF 302

Query: 299 IPLDLDL-CMIGSWPRDSLYILPNGHPSFALLCALRLWTTPRNRR-KALSHQIYSGSLLS 356
           IPL+  L  +  SWP+DSLYI  +G  SFAL+  LRLW  P+++R K++   +Y+GS +S
Sbjct: 303 IPLETSLFSLASSWPKDSLYIHQDGKLSFALISTLRLWLIPQSQRDKSVMRLVYAGSQIS 362

Query: 357 VENELEILKWLVKKCKETLQQLPTTIEFDDNLLVLLCKLQNSTSCITEMNRSIFEQEFAP 416
           V+NE+ ++KW+ +KC   L+ LPT++  D  LL  + KLQ+    + +     F  E   
Sbjct: 363 VKNEILVMKWMSEKCGSVLRDLPTSVTEDTVLLHNIDKLQDPELRLEQKETEAFGSEVRA 422

Query: 417 FFRFHGFKLDCSIHSKLPVRLLRS----LERWGLAVQWRCNYKRTLTKCIVHCKSLVHEL 472
           F   +    D ++ S  P+   R     L +W  +VQWR +YKRTL  CI +C   ++ L
Sbjct: 423 FLDANCL-WDVTVLSGKPIEFSRKTSRMLSKWRWSVQWRLSYKRTLADCISYCNEKMNNL 481

Query: 473 SLQQNQ 478
              Q++
Sbjct: 482 LGTQDR 487



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.137    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,863,384
Number of extensions: 404010
Number of successful extensions: 941
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 934
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 377
Effective length of database: 8,310,137
Effective search space: 3132921649
Effective search space used: 3132921649
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 114 (48.5 bits)