Os07g0419800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1644 family protein.
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Os07g0419800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1644 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.47 | 0.237 | 11 | 0.118 | 0.91 | 0.821 | 0.471 | 0.161 | 0.279 | 5.49 | 45.36 | 70 | -- | -- |
| 25.54 | 0.235 | 11 | 0.12 | 0.915 | 0.813 | 0.498 | -- | 0.28 | 5.45 | 45.51 | 68 | -- | -- |
| 25.98 | 0.237 | 11 | 0.118 | 0.921 | 0.817 | -- | 0.238 | 0.273 | 5.41 | 46.85 | 67 | -- | -- |
| 26.14 | 0.238 | 11 | 0.115 | 0.919 | 0.793 | -- | -- | 0.276 | 5.39 | 45.15 | 69 | -- | -- |
| 36.19 | 0.28 | 11 | 0.137 | -- | 1.26 | -- | 0.787 | 0.374 | -- | 6.885 | 494 | -- | -- |
| 35.06 | 0.278 | 11 | 0.102 | 1.2 | -- | 0.313 | -- | 0.234 | 3.71 | -- | -- | -- | -- |
| 35.36 | 0.278 | 11 | 0.0974 | 1.2 | -- | -- | -- | 0.232 | 3.7 | -- | -- | -- | -- |
| 34.69 | 0.274 | 11 | 0.135 | -- | 1.19 | -- | -- | 0.295 | -- | 5.58 | 480 | -- | -- |
| 26.48 | 0.24 | 11 | -- | 0.925 | 0.792 | -- | -- | 0.262 | 5.36 | 45.87 | 67 | -- | -- |
| 115.06 | 0.501 | 11 | 0.147 | -- | -- | -- | -- | 0.264 | -- | -- | -- | -- | -- |
| 35.61 | 0.279 | 11 | -- | 1.2 | -- | -- | -- | 0.221 | 3.7 | -- | -- | -- | -- |
| 35.14 | 0.276 | 11 | -- | -- | 1.19 | -- | -- | 0.281 | -- | 6.33 | 478 | -- | -- |
| 115.63 | 0.502 | 11 | -- | -- | -- | -- | -- | 0.248 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.32 | radiation | 40 | 270 | < th | dose dependent | rect. | 2 | 15 |
| 15 | 24.13 | radiation | 30 | 270 | < th | dose independent | rect. | 2 | 15 |
| 41 | 24.61 | radiation | 40 | 90 | < th | dose dependent | sin | 1 | NA |
| 49 | 24.77 | radiation | 40 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 60 | 24.90 | radiation | 40 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 66 | 24.95 | radiation | 40 | 270 | < th | dose dependent | sin | 5 | NA |
| 71 | 24.99 | radiation | 40 | 10 | < th | dose dependent | sin | 0 | NA |
| 80 | 25.06 | radiation | 30 | 90 | < th | dose independent | rect. | 3 | 19 |
| 108 | 25.25 | radiation | 40 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 110 | 25.27 | radiation | 20 | 270 | < th | dose independent | rect. | 1 | 9 |
| 128 | 25.39 | radiation | 40 | 10 | < th | dose dependent | rect. | 4 | 19 |
| 141 | 25.46 | radiation | 40 | 10 | < th | dose independent | rect. | 4 | 18 |
| 144 | 25.46 | radiation | 1 | 90 | > th | dose dependent | rect. | 7 | 10 |
| 212 | 25.65 | radiation | 1 | 90 | > th | dose dependent | sin | 1 | NA |
| 213 | 25.66 | radiation | 30 | 90 | < th | dose independent | rect. | 3 | 8 |
| 219 | 25.67 | radiation | 20 | 90 | < th | dose independent | rect. | 13 | 22 |
| 229 | 25.68 | radiation | 40 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 235 | 25.70 | radiation | 1 | 270 | > th | dose dependent | sin | 6 | NA |
| 258 | 25.75 | radiation | 40 | 90 | < th | dose dependent | no | NA | NA |
| 299 | 25.79 | radiation | 1 | 90 | > th | dose dependent | no | NA | NA |
| 358 | 25.82 | radiation | 1 | 10 | > th | dose dependent | rect. | 7 | 11 |
| 385 | 25.88 | radiation | 30 | 10 | < th | dose independent | rect. | 4 | 16 |
| 386 | 25.88 | radiation | 40 | 10 | < th | dose dependent | no | NA | NA |
| 391 | 25.89 | radiation | 40 | 270 | < th | dose independent | rect. | 10 | 21 |
| 419 | 25.94 | radiation | 1 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 522 | 26.07 | radiation | 40 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 535 | 26.10 | radiation | 40 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 635 | 26.23 | radiation | 40 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 648 | 26.27 | radiation | 40 | 90 | < th | dose dependent | rect. | 2 | 23 |
| 656 | 26.29 | radiation | 40 | 270 | < th | dose dependent | rect. | 11 | 20 |
| 664 | 26.31 | radiation | 1 | 270 | > th | dose dependent | rect. | 16 | 21 |
| 681 | 26.34 | radiation | 10 | 270 | < th | dose independent | rect. | 2 | 6 |
| 690 | 26.35 | radiation | 1 | 10 | > th | dose dependent | sin | 0 | NA |
| 692 | 26.35 | radiation | 1 | 270 | > th | dose dependent | rect. | 6 | 7 |
| 844 | 26.42 | radiation | 10 | 270 | < th | dose independent | sin | 4 | NA |
| 885 | 26.45 | radiation | 20 | 90 | < th | dose independent | rect. | 13 | 20 |
| 943 | 26.46 | radiation | 40 | 270 | < th | dose independent | rect. | 11 | 10 |