BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0419800 Os07g0419800|AK066281
(265 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24740.1 | chr3:9032397-9033461 FORWARD LENGTH=355 126 1e-29
AT4G31410.1 | chr4:15244259-15245474 FORWARD LENGTH=309 104 6e-23
AT4G08460.1 | chr4:5377378-5378202 REVERSE LENGTH=275 100 1e-21
AT1G68140.1 | chr1:25539410-25540414 REVERSE LENGTH=335 95 4e-20
AT1G77770.1 | chr1:29246380-29247275 REVERSE LENGTH=266 83 1e-16
AT3G25910.1 | chr3:9489836-9490954 FORWARD LENGTH=373 82 3e-16
AT1G15430.1 | chr1:5305011-5305790 FORWARD LENGTH=260 65 3e-11
AT2G26050.1 | chr2:11098652-11099380 REVERSE LENGTH=222 61 5e-10
AT1G80220.1 | chr1:30167839-30168606 FORWARD LENGTH=256 59 2e-09
>AT3G24740.1 | chr3:9032397-9033461 FORWARD LENGTH=355
Length = 354
Score = 126 bits (316), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/124 (49%), Positives = 80/124 (64%), Gaps = 5/124 (4%)
Query: 6 LKCSVHTTAPCRGSVSGWIPAGEVRKYLNEKLRTCSHDSCKFVGTYEQLREHARTAHLLA 65
LKC + CRG+V GW EVR YL+ K R+CS +SC F G Y+ LR HAR H
Sbjct: 138 LKCPL-----CRGTVLGWKVVEEVRTYLDHKNRSCSRESCSFTGNYQDLRRHARRTHPTT 192
Query: 66 KPAHVDLSRKRTWDRLEREQEVGDVISAIRSQNPGAIIVGDYVIETRDAMSPDENTGDES 125
+P+ D SR+R W RLE ++E GD++SAIRS PGA++VGDYVIE D + + TG+
Sbjct: 193 RPSDTDPSRERAWRRLENQREYGDIVSAIRSAMPGAVVVGDYVIENGDRFAGERETGNGG 252
Query: 126 NDEW 129
+D W
Sbjct: 253 SDLW 256
>AT4G31410.1 | chr4:15244259-15245474 FORWARD LENGTH=309
Length = 308
Score = 104 bits (259), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 76/125 (60%), Gaps = 11/125 (8%)
Query: 16 CRGSVSGWIPAGEVRKYLNEKLRTCSHDSCKFVGTYEQLREHARTAHLLAKPAHVDLSRK 75
CRG V+GW+ E R L+EK R C + C+F+GTY +LR+HA++ H ++P+ +D +RK
Sbjct: 105 CRGEVTGWLVVEEARLRLDEKKRCCEEERCRFMGTYLELRKHAQSEHPDSRPSEIDPARK 164
Query: 76 RTWDRLEREQEVGDVISAIRSQNPGAIIVGDYVIETRDAMSPDENTGDESND------EW 129
W+ ++ E+ DV+S I S+ P +++GDYVIE D++TGDE D W
Sbjct: 165 LDWENFQQSSEIIDVLSTIHSEVPRGVVLGDYVIEY-----GDDDTGDEFEDVPNNEGNW 219
Query: 130 WRDSI 134
W I
Sbjct: 220 WTSCI 224
>AT4G08460.1 | chr4:5377378-5378202 REVERSE LENGTH=275
Length = 274
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 60/95 (63%)
Query: 16 CRGSVSGWIPAGEVRKYLNEKLRTCSHDSCKFVGTYEQLREHARTAHLLAKPAHVDLSRK 75
CRG V GW + RKYLN K R+C +D C F G+Y QL++H + H AKP +D +
Sbjct: 110 CRGQVKGWTVVEKERKYLNSKKRSCMNDECLFYGSYRQLKKHVKENHPRAKPRAIDPVLE 169
Query: 76 RTWDRLEREQEVGDVISAIRSQNPGAIIVGDYVIE 110
W +LE E+E DVIS + S PGA++ GDYVIE
Sbjct: 170 AKWKKLEVERERSDVISTVMSSTPGAMVFGDYVIE 204
>AT1G68140.1 | chr1:25539410-25540414 REVERSE LENGTH=335
Length = 334
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 61/103 (59%)
Query: 12 TTAPCRGSVSGWIPAGEVRKYLNEKLRTCSHDSCKFVGTYEQLREHARTAHLLAKPAHVD 71
T CRG V GW R +LN K R C ++C + GT+++LR+H + H AKP VD
Sbjct: 119 TCPLCRGQVKGWTIVQPARDFLNLKKRICMQENCVYAGTFKELRKHMKVDHPSAKPREVD 178
Query: 72 LSRKRTWDRLEREQEVGDVISAIRSQNPGAIIVGDYVIETRDA 114
++ W RLE E + DV+S IRS PG ++ GDYVIE +A
Sbjct: 179 PDVEQNWRRLEIEHDRDDVMSTIRSTMPGTVVYGDYVIERNNA 221
>AT1G77770.1 | chr1:29246380-29247275 REVERSE LENGTH=266
Length = 265
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 60/95 (63%)
Query: 16 CRGSVSGWIPAGEVRKYLNEKLRTCSHDSCKFVGTYEQLREHARTAHLLAKPAHVDLSRK 75
CRG V GW + R + N K RTC D+C F+G + +L++H + H A P +D + +
Sbjct: 90 CRGQVKGWTVVKDARMHFNSKRRTCMQDNCSFLGNFRKLKKHMKEKHPHACPRAIDPALE 149
Query: 76 RTWDRLEREQEVGDVISAIRSQNPGAIIVGDYVIE 110
W RLERE++ DVIS I S PGA+++GDYVIE
Sbjct: 150 TKWKRLERERDRRDVISTIMSSTPGAVVLGDYVIE 184
>AT3G25910.1 | chr3:9489836-9490954 FORWARD LENGTH=373
Length = 372
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 57/95 (60%)
Query: 12 TTAPCRGSVSGWIPAGEVRKYLNEKLRTCSHDSCKFVGTYEQLREHARTAHLLAKPAHVD 71
T CRG + W+ R ++N K R+CS ++C F G+Y LR+HAR H +P+ D
Sbjct: 175 TCPLCRGHIKEWVVVKAARCFMNSKHRSCSCETCDFSGSYSDLRKHARLLHPGVRPSEAD 234
Query: 72 LSRKRTWDRLEREQEVGDVISAIRSQNPGAIIVGD 106
R+R+W RLER+ ++GD++S ++S G I D
Sbjct: 235 PERQRSWRRLERQSDLGDLLSTLQSSFGGDEISND 269
>AT1G15430.1 | chr1:5305011-5305790 FORWARD LENGTH=260
Length = 259
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 46/78 (58%)
Query: 16 CRGSVSGWIPAGEVRKYLNEKLRTCSHDSCKFVGTYEQLREHARTAHLLAKPAHVDLSRK 75
CRG V G + + R+++N + R C+ D C F GTY QL+ H +T H P +D +
Sbjct: 112 CRGEVQGTMKSTCARRFMNARPRCCTVDKCDFSGTYAQLKNHLKTEHPGFTPPKLDPWEQ 171
Query: 76 RTWDRLEREQEVGDVISA 93
W++LERE E ++++A
Sbjct: 172 HMWEQLEREAEYIEMLNA 189
>AT2G26050.1 | chr2:11098652-11099380 REVERSE LENGTH=222
Length = 221
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 16 CRGSVSGWIPA-GEVRKYLNEKLRTCSHDSCKFVGTYEQLREHARTAHLLAKPAHVDLSR 74
CRG VS R+++N K R+CS + CKF GT+ QL +H +T H P VD R
Sbjct: 77 CRGEVSETTKVTSTARRFMNAKPRSCSVEDCKFSGTFSQLTKHLKTEHRGIVPPKVDPLR 136
Query: 75 KRTWDRLEREQEVGDVISA 93
++ W+ +ER E ++++A
Sbjct: 137 QQRWEMMERHSEYVELMTA 155
>AT1G80220.1 | chr1:30167839-30168606 FORWARD LENGTH=256
Length = 255
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 16 CRGSVSGWIPAGEV-RKYLNEKLRTCSHDSCKFVGTYEQLREHARTAHLLAKPAHVDLSR 74
CRG V A + R+++N K R+C D C+F GTY L +H +T H PA VD R
Sbjct: 106 CRGEVLETKKASKTARRFMNAKPRSCPVDGCEFSGTYAHLNKHLKTEHQGLVPAKVDPQR 165
Query: 75 KRTWDRLEREQEVGDVISA 93
+ W+ L R E +++SA
Sbjct: 166 QSRWEMLVRHAEYVNLMSA 184
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.134 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,290,504
Number of extensions: 273360
Number of successful extensions: 666
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 666
Number of HSP's successfully gapped: 9
Length of query: 265
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 168
Effective length of database: 8,447,217
Effective search space: 1419132456
Effective search space used: 1419132456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)