FiT-DB / Search/ Help/ Sample detail

Os07g0419500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glycosyl transferase, family 28 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.84 (0.0242) R2 : 0.44
β1 : 0.816 (0.0884) R2dD : 0.109 R2D : 0.123
β2 : 0.873 (0.0577) R2dC : 0.283 R2C : 0.27
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.252 (0.0515) R2dN8 : 0.0393 R2N8 : 0.052
σ : 0.454
deviance : 94.02
__
_____
C
peak time of C : 10.9
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
83.13 0.428 7.88 0.472 0.889 2.57 0.915 -9.22 -0.229 10.9 999.2 890 -- --
84.01 0.427 7.83 0.72 0.885 0.977 1.01 -- -0.216 10.5 999.1 538 -- --
86.6 0.433 7.88 0.457 0.885 2.69 -- -10.2 -0.224 10.9 999.6 969 -- --
86.75 0.434 7.83 0.755 0.888 1.03 -- -- -0.224 10.9 998.9 916 -- --
134.77 0.541 7.9 0.496 -- 2.72 -- -10.1 -0.233 -- 999 1154 -- --
90.75 0.447 7.84 0.781 0.877 -- 0.882 -- -0.254 10.9 -- -- -- --
94.02 0.454 7.84 0.816 0.873 -- -- -- -0.252 10.9 -- -- -- --
134.36 0.54 7.85 0.743 -- 1.13 -- -- -0.234 -- 998.3 1432 -- --
101.15 0.468 7.85 -- 0.881 1.1 -- -- -0.299 10.8 999.8 940 -- --
141.33 0.555 7.86 0.798 -- -- -- -- -0.258 -- -- -- -- --
111.59 0.494 7.86 -- 0.867 -- -- -- -0.343 10.8 -- -- -- --
148.51 0.568 7.87 -- -- 1.21 -- -- -0.306 -- 999 1354 -- --
158.13 0.587 7.88 -- -- -- -- -- -0.346 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 82.68 atmosphere 995 30 > th dose dependent rect. 11 23
3 82.99 atmosphere 995 1440 > th dose independent rect. 18 2
5 83.01 atmosphere 1000 720 < th dose dependent rect. 14 17
16 83.17 atmosphere 1000 30 > th dose independent rect. 11 23
18 83.18 wind 5 4320 < th dose independent rect. 14 1
22 83.20 atmosphere 1000 10 > th dose independent rect. 19 23
23 83.20 wind 3 4320 > th dose dependent rect. 14 2
29 83.22 wind 5 4320 < th dose independent rect. 13 3
42 83.28 atmosphere 1000 720 < th dose dependent sin 14 NA
43 83.29 atmosphere 995 1440 > th dose independent rect. 20 21
57 83.33 wind 5 4320 > th dose independent rect. 14 1
86 83.41 atmosphere 1000 720 < th dose dependent rect. 18 22
89 83.42 atmosphere 995 1440 > th dose independent rect. 2 15
97 83.44 atmosphere 995 1440 > th dose independent rect. 24 17
106 83.47 atmosphere 995 1440 > th dose independent rect. 18 8
111 83.48 atmosphere 995 1440 > th dose independent rect. 13 3
116 83.49 atmosphere 995 1440 > th dose independent rect. 12 8
118 83.49 atmosphere 1000 720 < th dose dependent no NA NA
130 83.51 atmosphere 995 1440 > th dose independent rect. 13 23
132 83.51 atmosphere 995 720 > th dose dependent rect. 17 6
138 83.52 atmosphere 995 1440 > th dose independent rect. 18 21
143 83.52 atmosphere 1000 720 < th dose dependent rect. 3 23
148 83.54 atmosphere 995 1440 > th dose independent rect. 12 14
154 83.55 atmosphere 995 1440 > th dose independent rect. 10 10
164 83.56 atmosphere 995 1440 > th dose independent rect. 15 1
166 83.56 atmosphere 995 1440 > th dose independent rect. 12 12
174 83.58 atmosphere 995 1440 > th dose independent rect. 13 21
178 83.59 atmosphere 995 4320 > th dose independent sin 10 NA
188 83.59 atmosphere 1000 720 < th dose dependent rect. 22 23
198 83.61 atmosphere 995 1440 > th dose independent sin 4 NA
199 83.61 atmosphere 995 4320 < th dose independent sin 10 NA
203 83.61 atmosphere 995 1440 > th dose independent rect. 10 14
204 83.61 atmosphere 995 1440 > th dose independent rect. 10 16
218 83.63 atmosphere 995 1440 > th dose independent rect. 4 13
230 83.64 atmosphere 995 1440 > th dose independent sin 7 NA
255 83.65 atmosphere 1000 1440 < th dose dependent rect. 20 16
262 83.66 atmosphere 995 1440 > th dose independent rect. 11 6
269 83.66 atmosphere 995 1440 > th dose independent rect. 12 17
272 83.66 atmosphere 995 1440 > th dose independent rect. 3 23
273 83.66 atmosphere 995 1440 > th dose independent rect. 24 23
301 83.68 atmosphere 995 1440 > th dose independent rect. 3 21
304 83.68 atmosphere 995 4320 < th dose dependent rect. 16 11
322 83.69 atmosphere 995 4320 < th dose dependent rect. 17 8
338 83.70 atmosphere 995 1440 > th dose independent rect. 14 12
341 83.70 atmosphere 995 4320 > th dose independent rect. 16 14
346 83.70 atmosphere 995 1440 > th dose independent rect. 10 20
363 83.71 atmosphere 995 1440 > th dose independent rect. 14 10
366 83.71 atmosphere 995 4320 < th dose independent rect. 15 13
372 83.71 atmosphere 995 4320 > th dose independent rect. 16 17
378 83.71 atmosphere 995 1440 > th dose independent rect. 5 19
394 83.71 radiation 10 1440 < th dose dependent rect. 10 1
404 83.72 atmosphere 995 1440 > th dose independent sin 18 NA
409 83.72 radiation 10 1440 < th dose independent rect. 10 1
415 83.72 atmosphere 995 4320 < th dose independent rect. 15 11
417 83.72 atmosphere 995 4320 < th dose independent rect. 17 12
474 83.73 atmosphere 995 4320 < th dose independent rect. 15 9
521 83.74 atmosphere 995 1440 > th dose independent no NA NA
523 83.74 atmosphere 995 1440 < th dose independent sin 0 NA
528 83.74 atmosphere 995 1440 < th dose independent rect. 14 3
594 83.74 atmosphere 995 1440 < th dose dependent sin 7 NA
595 83.74 atmosphere 995 1440 < th dose dependent sin 5 NA
602 83.75 atmosphere 995 1440 < th dose independent sin 7 NA
603 83.75 atmosphere 995 1440 < th dose independent sin 21 NA
610 83.75 atmosphere 995 4320 < th dose independent rect. 16 6
650 83.75 atmosphere 995 1440 < th dose dependent sin 3 NA
653 83.75 atmosphere 1000 1440 < th dose dependent rect. 5 1
654 83.75 atmosphere 995 1440 < th dose dependent rect. 14 3
682 83.76 atmosphere 995 1440 < th dose independent sin 19 NA
684 83.76 atmosphere 995 1440 < th dose independent no NA NA
685 83.76 atmosphere 1000 1440 > th dose independent rect. 10 1
921 83.76 atmosphere 995 1440 < th dose dependent sin 1 NA
929 83.77 atmosphere 995 1440 < th dose independent sin 17 NA
945 83.77 atmosphere 995 1440 < th dose dependent sin 22 NA
948 83.77 atmosphere 1000 1440 < th dose dependent rect. 20 11
985 83.78 atmosphere 995 1440 < th dose dependent sin 19 NA