BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0419500 Os07g0419500|J065215N23
         (60 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G07020.2  | chr3:2218120-2221590 REVERSE LENGTH=638             83   4e-17
AT1G43620.1  | chr1:16425654-16429500 REVERSE LENGTH=616           70   3e-13

>AT3G07020.2 | chr3:2218120-2221590 REVERSE LENGTH=638
          Length = 637

 Score = 82.8 bits (203), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/42 (85%), Positives = 40/42 (95%)

Query: 5   LQIYGHRVRLATHANFKDFVVTAGLEFYPLGGDPKLLAGCML 46
           LQ YGHRVRLATHANFK+FV+TAGLEFYPLGGDPK+LAG M+
Sbjct: 216 LQDYGHRVRLATHANFKEFVLTAGLEFYPLGGDPKVLAGYMV 257



>AT1G43620.1 | chr1:16425654-16429500 REVERSE LENGTH=616
          Length = 615

 Score = 69.7 bits (169), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/41 (73%), Positives = 34/41 (82%)

Query: 5   LQIYGHRVRLATHANFKDFVVTAGLEFYPLGGDPKLLAGCM 45
           LQ +GHRVRLATHANF+ FV  AG+EFYPLGGDP+ LA  M
Sbjct: 179 LQEFGHRVRLATHANFRSFVRAAGVEFYPLGGDPRELAAYM 219



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.331    0.149    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,203,634
Number of extensions: 33441
Number of successful extensions: 78
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 2
Length of query: 60
Length of database: 11,106,569
Length adjustment: 33
Effective length of query: 27
Effective length of database: 10,201,841
Effective search space: 275449707
Effective search space used: 275449707
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 104 (44.7 bits)