Os07g0406800 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0406800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Eukaryotic-type DNA primase, large subunit family protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	3.45	(0.0303)	R²	:	0.316
β₁	:	-0.925	(0.112)	R²_dD	:	0.108	R²_D	:	0.147
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	3.57	(0.34)	R²_dE	:	0.169	R²_E	:	0.201
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.0586	(0.0648)	R²_dN8	:	0.00165	R²_N8	:	0.00431
σ	:	0.566
deviance	:	147.83
__

_____

C
peak time of C	:	--
E
wheather	:	wind
threshold	:	7.223
memory length	:	2
response mode	:	> th
dose dependency	:	dose independent
G
type of G	:	rect.
peak or start time of G	:	17.4
open length of G	:	2.05

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
124.43	0.524	3.42	-1.2	0.455	-3.45	-1.57	-25.5	0.0557	22.9	7.101	10	17	1.93
126.01	0.527	3.46	-1.01	0.453	2.78	-1.57	--	0.0467	22.9	7.101	10	17	1.93
134.58	0.54	3.41	-1.15	0.476	-3.61	--	-26.6	0.0511	23.3	7.105	9	17	2.08
134.47	0.54	3.46	-0.94	0.461	3.52	--	--	0.0532	23.6	7.217	2	17.4	2.6
147.95	0.567	3.4	-1.12	--	-3.51	--	-26.6	0.0665	--	7.123	9	17	2.06
153.94	0.582	3.48	-1.17	0.48	--	-2.01	--	0.00422	21.7	--	--	--	--
168.46	0.608	3.47	-1.1	0.494	--	--	--	0.00455	22.7	--	--	--	--
147.83	0.566	3.45	-0.925	--	3.57	--	--	0.0586	--	7.223	2	17.4	2.05
157.32	0.584	3.44	--	0.449	3.91	--	--	0.161	23.5	7.289	2	17.4	2.26
183.5	0.633	3.46	-1.09	--	--	--	--	0.00721	--	--	--	--	--
200.22	0.662	3.45	--	0.486	--	--	--	0.127	22.5	--	--	--	--
169.97	0.607	3.43	--	--	3.96	--	--	0.165	--	7.266	2	17.3	2.58
214.73	0.684	3.43	--	--	--	--	--	0.128	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	125.07	wind	7	10	> th	dose dependent	rect.	17	2
2	125.27	wind	7	10	> th	dose independent	rect.	17	2
159	131.33	wind	9	10	< th	dose independent	sin	13	NA
191	132.77	wind	9	10	> th	dose independent	sin	12	NA
200	133.55	wind	9	10	> th	dose independent	rect.	13	6
254	134.96	temperature	25	10	< th	dose independent	rect.	16	6
290	136.25	radiation	1	90	< th	dose independent	rect.	17	1
317	136.68	temperature	25	30	< th	dose independent	rect.	17	1
329	136.83	radiation	1	90	< th	dose dependent	rect.	17	1
351	137.14	atmosphere	1010	10	< th	dose dependent	rect.	17	6
404	137.52	humidity	90	30	< th	dose independent	rect.	17	1
411	137.66	atmosphere	1005	270	< th	dose independent	rect.	17	1
413	137.71	wind	5	10	> th	dose dependent	rect.	13	6
415	137.77	wind	9	90	> th	dose dependent	rect.	17	17
455	137.96	temperature	15	30	> th	dose independent	rect.	22	19
501	138.09	temperature	25	30	< th	dose independent	rect.	14	9
510	138.17	temperature	20	30	> th	dose independent	rect.	17	1
511	138.17	temperature	15	30	> th	dose independent	rect.	18	23
517	138.31	wind	7	90	> th	dose independent	rect.	13	5
532	138.46	wind	9	90	> th	dose independent	sin	13	NA
575	138.71	atmosphere	1005	30	< th	dose independent	rect.	16	6
595	138.87	wind	9	90	> th	dose independent	rect.	13	21
623	139.04	wind	7	10	> th	dose dependent	sin	12	NA
626	139.05	temperature	15	270	> th	dose independent	rect.	19	7
662	139.27	radiation	1	720	> th	dose independent	rect.	8	9
689	139.48	radiation	1	720	< th	dose independent	rect.	11	2
690	139.48	radiation	1	720	< th	dose dependent	rect.	11	2
711	139.57	radiation	1	720	< th	dose dependent	rect.	11	7
719	139.62	radiation	1	720	< th	dose independent	rect.	11	12
754	139.72	radiation	1	720	< th	dose independent	rect.	11	7
779	139.79	radiation	1	720	< th	dose dependent	rect.	11	12
815	139.90	temperature	15	30	> th	dose independent	rect.	22	4
863	140.04	radiation	1	720	< th	dose independent	rect.	11	16
868	140.07	humidity	90	720	> th	dose independent	rect.	12	1
870	140.07	humidity	90	720	> th	dose dependent	rect.	12	1
880	140.11	wind	9	90	< th	dose independent	sin	14	NA
894	140.18	radiation	1	720	< th	dose dependent	rect.	11	16
945	140.34	wind	9	90	> th	dose dependent	sin	13	NA
957	140.38	radiation	1	720	> th	dose independent	rect.	8	11