BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0406800 Os07g0406800|AK101812
(463 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0406800 Eukaryotic-type DNA primase, large subunit fam... 901 0.0
>Os07g0406800 Eukaryotic-type DNA primase, large subunit family protein
Length = 463
Score = 901 bits (2329), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/463 (93%), Positives = 435/463 (93%)
Query: 1 MEIVRSHRQIXXXXXXXXXXXXXXXXLPTYRVAPQLEVRLEEFELFAIDRLRVLKGIADG 60
MEIVRSHRQI LPTYRVAPQLEVRLEEFELFAIDRLRVLKGIADG
Sbjct: 1 MEIVRSHRQIAAEAAAGVGCGGGAGGLPTYRVAPQLEVRLEEFELFAIDRLRVLKGIADG 60
Query: 61 LSRGKRPEEMEKLVKELWKAHMRHQDPTETLNKDIISHFVLRLVYCRTEELRKWFLSMET 120
LSRGKRPEEMEKLVKELWKAHMRHQDPTETLNKDIISHFVLRLVYCRTEELRKWFLSMET
Sbjct: 61 LSRGKRPEEMEKLVKELWKAHMRHQDPTETLNKDIISHFVLRLVYCRTEELRKWFLSMET 120
Query: 121 TLFRYRFRLESPESQRMLMSEFRLPYKALPHSEFEAVKDKLSQVARTIGQSAAVESVFFK 180
TLFRYRFRLESPESQRMLMSEFRLPYKALPHSEFEAVKDKLSQVARTIGQSAAVESVFFK
Sbjct: 121 TLFRYRFRLESPESQRMLMSEFRLPYKALPHSEFEAVKDKLSQVARTIGQSAAVESVFFK 180
Query: 181 VPFEEVPDLVASRRVFLSKGYAYVAMSQVVSLVVTQFRCNISKALVLTNRKWTATIKEQE 240
VPFEEVPDLVASRRVFLSKGYAYVAMSQVVSLVVTQFRCNISKALVLTNRKWTATIKEQE
Sbjct: 181 VPFEEVPDLVASRRVFLSKGYAYVAMSQVVSLVVTQFRCNISKALVLTNRKWTATIKEQE 240
Query: 241 KDRLTPIVEALSNAYFGPDYSQPKDAVEISLKDIDQLAKTSFPLCMRHMLEKLRENHHLK 300
KDRLTPIVEALSNAYFGPDYSQPKDAVEISLKDIDQLAKTSFPLCMRHMLEKLRENHHLK
Sbjct: 241 KDRLTPIVEALSNAYFGPDYSQPKDAVEISLKDIDQLAKTSFPLCMRHMLEKLRENHHLK 300
Query: 301 HGGRMQXXXXXXXXXXXXEDALAFWRAEFSQKVGSERFDKEYAYSIRHNYGKEGKRTDYT 360
HGGRMQ EDALAFWRAEFSQKVGSERFDKEYAYSIRHNYGKEGKRTDYT
Sbjct: 301 HGGRMQFGLFLKGAGLKLEDALAFWRAEFSQKVGSERFDKEYAYSIRHNYGKEGKRTDYT 360
Query: 361 PYSCQKIISATPGVGDHHGCPYRHFGEDNLRAALNKMGISGHPLEEIMDKVKNRHYQLAC 420
PYSCQKIISATPGVGDHHGCPYRHFGEDNLRAALNKMGISGHPLEEIMDKVKNRHYQLAC
Sbjct: 361 PYSCQKIISATPGVGDHHGCPYRHFGEDNLRAALNKMGISGHPLEEIMDKVKNRHYQLAC 420
Query: 421 TMTFEAEHGVSCDTGINHPNQYFSESQKVLKAKNQAVQSQGTT 463
TMTFEAEHGVSCDTGINHPNQYFSESQKVLKAKNQAVQSQGTT
Sbjct: 421 TMTFEAEHGVSCDTGINHPNQYFSESQKVLKAKNQAVQSQGTT 463
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.134 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,726,115
Number of extensions: 515756
Number of successful extensions: 1223
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1222
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 359
Effective length of database: 11,605,545
Effective search space: 4166390655
Effective search space used: 4166390655
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)