Os07g0287400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor domain containing protein.
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Os07g0287400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 367.5 | 0.901 | 4.59 | -0.444 | 1.17 | -2.13 | -1.15 | -2.87 | -0.597 | 13.9 | 21 | 6081 | -- | -- |
| 377.54 | 0.905 | 4.46 | -0.0333 | 1.15 | -1.56 | -1.18 | -- | -0.453 | 13.9 | 21.79 | 6233 | -- | -- |
| 372.5 | 0.899 | 4.59 | -0.476 | 1.17 | -2.1 | -- | -2.83 | -0.605 | 13.7 | 21 | 6081 | -- | -- |
| 382.75 | 0.911 | 4.46 | -0.0585 | 1.16 | -1.59 | -- | -- | -0.46 | 13.7 | 21.7 | 6203 | -- | -- |
| 453.64 | 0.992 | 4.58 | -0.4 | -- | -2.24 | -- | -2.62 | -0.593 | -- | 20.9 | 5445 | -- | -- |
| 434.73 | 0.977 | 4.58 | -1.06 | 1.2 | -- | -1.14 | -- | -1.02 | 13.8 | -- | -- | -- | -- |
| 439.57 | 0.982 | 4.58 | -1.09 | 1.2 | -- | -- | -- | -1.03 | 13.7 | -- | -- | -- | -- |
| 456.05 | 0.995 | 4.47 | -0.208 | -- | -1.6 | -- | -- | -0.491 | -- | 21.74 | 3810 | -- | -- |
| 382.73 | 0.911 | 4.46 | -- | 1.16 | -1.61 | -- | -- | -0.459 | 13.6 | 21.6 | 6196 | -- | -- |
| 526.9 | 1.07 | 4.6 | -1.14 | -- | -- | -- | -- | -1.06 | -- | -- | -- | -- | -- |
| 471.04 | 1.02 | 4.56 | -- | 1.22 | -- | -- | -- | -0.909 | 13.7 | -- | -- | -- | -- |
| 456.88 | 0.996 | 4.46 | -- | -- | -1.71 | -- | -- | -0.447 | -- | 21.64 | 3823 | -- | -- |
| 561.25 | 1.11 | 4.57 | -- | -- | -- | -- | -- | -0.93 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 356.10 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 2 | 358.70 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 15 | 369.12 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 23 | 3 |
| 19 | 369.52 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 20 | 369.59 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 25 | 369.87 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 27 | 369.95 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 20 | 3 |
| 28 | 369.95 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 20 | 3 |
| 30 | 370.00 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 20 | 3 |
| 34 | 370.13 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 35 | 370.13 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 38 | 370.20 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 87 | 371.75 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 92 | 371.88 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 19 | 9 |
| 113 | 372.16 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 19 | 9 |
| 182 | 373.15 | temperature | 20.0 | 4320 | > th | dose independent | sin | 15 | NA |
| 207 | 373.42 | temperature | 20.0 | 4320 | < th | dose independent | sin | 15 | NA |
| 292 | 374.14 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 3 | 1 |
| 372 | 374.75 | temperature | 25.0 | 4320 | < th | dose dependent | sin | 14 | NA |
| 407 | 375.02 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 3 | 1 |
| 530 | 375.63 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 563 | 375.83 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 11 | NA |
| 577 | 375.93 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 5 |
| 640 | 376.30 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 13 | 20 |