BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0287400 Os07g0287400|AK105204
         (104 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G48485.1  | chr5:19646317-19646625 REVERSE LENGTH=103           65   8e-12
AT5G48490.1  | chr5:19647932-19648237 REVERSE LENGTH=102           59   4e-10

>AT5G48485.1 | chr5:19646317-19646625 REVERSE LENGTH=103
          Length = 102

 Score = 64.7 bits (156), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 38/75 (50%), Gaps = 2/75 (2%)

Query: 30  CNMSNDEFMKCQXXXXXXXXXXXXXXXGCCSALSHADLNCLCSYKNSPWLSIYNIDPNRA 89
           C MS DE  +C+                CC+AL HAD  CLC YKNSPWL  + +DP  A
Sbjct: 30  CGMSQDELNECKPAVSKENPTSPSQP--CCTALQHADFACLCGYKNSPWLGSFGVDPELA 87

Query: 90  MQLPAKCGLTMPANC 104
             LP +CGL     C
Sbjct: 88  SALPKQCGLANAPTC 102



>AT5G48490.1 | chr5:19647932-19648237 REVERSE LENGTH=102
          Length = 101

 Score = 59.3 bits (142), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 30/47 (63%)

Query: 58  CCSALSHADLNCLCSYKNSPWLSIYNIDPNRAMQLPAKCGLTMPANC 104
           CC+AL HAD  CLC YKNSPWL  + +DP  A  LP +C LT    C
Sbjct: 55  CCNALKHADYTCLCGYKNSPWLGSFGVDPKLASSLPKECDLTNAPTC 101



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.131    0.462 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,423,441
Number of extensions: 40269
Number of successful extensions: 166
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 3
Length of query: 104
Length of database: 11,106,569
Length adjustment: 74
Effective length of query: 30
Effective length of database: 9,077,785
Effective search space: 272333550
Effective search space used: 272333550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 104 (44.7 bits)