BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0287400 Os07g0287400|AK105204
         (104 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0287400  Plant lipid transfer/seed storage/trypsin-alph...   122   4e-29
Os07g0290200  Plant lipid transfer/seed storage/trypsin-alph...    64   3e-11

>Os07g0287400 Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor
           domain containing protein
          Length = 104

 Score =  122 bits (307), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 60/75 (80%), Positives = 60/75 (80%)

Query: 30  CNMSNDEFMKCQXXXXXXXXXXXXXXXGCCSALSHADLNCLCSYKNSPWLSIYNIDPNRA 89
           CNMSNDEFMKCQ               GCCSALSHADLNCLCSYKNSPWLSIYNIDPNRA
Sbjct: 30  CNMSNDEFMKCQPAAAATSNPTTNPSAGCCSALSHADLNCLCSYKNSPWLSIYNIDPNRA 89

Query: 90  MQLPAKCGLTMPANC 104
           MQLPAKCGLTMPANC
Sbjct: 90  MQLPAKCGLTMPANC 104



>Os07g0290200 Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor
           domain containing protein
          Length = 104

 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 42/79 (53%), Gaps = 5/79 (6%)

Query: 30  CNMSNDEFMKCQXXXXXXXXXXXXXXXGCCSALSHADLNCLCSYKNSP----WLSIYNID 85
           CN+S+     C+                CC AL+ ADL CLC YK S     W+  Y ID
Sbjct: 27  CNLSDAGLQACKPAAAVRNPADTPSSE-CCDALAAADLPCLCRYKGSAGARVWVRFYGID 85

Query: 86  PNRAMQLPAKCGLTMPANC 104
            NRAM LP KCGLT+PA+C
Sbjct: 86  LNRAMTLPGKCGLTLPAHC 104



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.131    0.462 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,159,550
Number of extensions: 60638
Number of successful extensions: 175
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 2
Length of query: 104
Length of database: 17,035,801
Length adjustment: 72
Effective length of query: 32
Effective length of database: 13,276,393
Effective search space: 424844576
Effective search space used: 424844576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)