Os07g0230500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Excinuclease ABC, C subunit, N-terminal domain containing protein.
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Os07g0230500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Excinuclease ABC, C subunit, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 149.57 | 0.575 | 3.78 | 0.276 | 0.301 | -2.14 | 0.776 | -2.39 | -0.214 | 4.96 | 19.7 | 6732 | -- | -- |
| 153.48 | 0.577 | 3.88 | 0.109 | 0.289 | -1.42 | 0.678 | -- | -0.312 | 5.48 | 20.76 | 6588 | -- | -- |
| 150.74 | 0.572 | 3.77 | 0.3 | 0.307 | -2.14 | -- | -2.47 | -0.189 | 5.46 | 19.55 | 6769 | -- | -- |
| 154.57 | 0.579 | 3.88 | 0.146 | 0.313 | -1.39 | -- | -- | -0.297 | 5.43 | 20.73 | 6669 | -- | -- |
| 155.55 | 0.581 | 3.77 | 0.267 | -- | -2.28 | -- | -2.72 | -0.209 | -- | 19.59 | 6825 | -- | -- |
| 190.17 | 0.646 | 3.78 | 1.13 | 0.323 | -- | 0.761 | -- | 0.163 | 4.48 | -- | -- | -- | -- |
| 191.66 | 0.648 | 3.78 | 1.12 | 0.332 | -- | -- | -- | 0.159 | 4.87 | -- | -- | -- | -- |
| 159.56 | 0.588 | 3.88 | 0.145 | -- | -1.38 | -- | -- | -0.291 | -- | 20.8 | 6801 | -- | -- |
| 154.9 | 0.58 | 3.89 | -- | 0.313 | -1.47 | -- | -- | -0.335 | 5.49 | 20.73 | 6674 | -- | -- |
| 197.49 | 0.657 | 3.78 | 1.14 | -- | -- | -- | -- | 0.168 | -- | -- | -- | -- | -- |
| 224.91 | 0.702 | 3.81 | -- | 0.353 | -- | -- | -- | 0.0339 | 4.78 | -- | -- | -- | -- |
| 159.86 | 0.589 | 3.9 | -- | -- | -1.46 | -- | -- | -0.332 | -- | 20.77 | 6804 | -- | -- |
| 231.5 | 0.71 | 3.81 | -- | -- | -- | -- | -- | 0.0416 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 152.06 | temperature | 20 | 4320 | < th | dose independent | rect. | 4 | 1 |
| 2 | 152.21 | temperature | 20 | 4320 | > th | dose independent | rect. | 4 | 1 |
| 3 | 153.12 | humidity | 70 | 43200 | > th | dose independent | rect. | 1 | 8 |
| 6 | 153.40 | temperature | 25 | 4320 | < th | dose dependent | rect. | 5 | 1 |
| 7 | 153.41 | temperature | 10 | 4320 | > th | dose dependent | rect. | 5 | 1 |
| 8 | 153.41 | temperature | 25 | 4320 | < th | dose dependent | rect. | 4 | 3 |
| 17 | 153.53 | humidity | 70 | 43200 | < th | dose independent | rect. | 1 | 8 |
| 86 | 154.50 | radiation | 1 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 114 | 154.72 | temperature | 20 | 14400 | < th | dose dependent | rect. | 24 | 10 |
| 123 | 154.77 | temperature | 20 | 14400 | < th | dose dependent | rect. | 24 | 15 |
| 168 | 154.93 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 171 | 154.95 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 192 | 155.01 | temperature | 20 | 14400 | < th | dose dependent | sin | 7 | NA |
| 218 | 155.10 | temperature | 25 | 14400 | > th | dose independent | rect. | 8 | 4 |
| 221 | 155.11 | temperature | 25 | 14400 | < th | dose independent | rect. | 8 | 4 |
| 242 | 155.23 | radiation | 1 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 261 | 155.30 | temperature | 20 | 14400 | < th | dose dependent | rect. | 12 | 19 |
| 340 | 155.57 | temperature | 25 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 369 | 155.66 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 498 | 155.96 | humidity | 70 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 514 | 156.00 | temperature | 20 | 14400 | < th | dose dependent | no | NA | NA |
| 529 | 156.02 | humidity | 70 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 594 | 156.22 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 766 | 156.72 | temperature | 25 | 14400 | > th | dose independent | sin | 2 | NA |
| 773 | 156.73 | temperature | 25 | 14400 | > th | dose independent | rect. | 8 | 13 |
| 813 | 156.82 | temperature | 25 | 14400 | < th | dose independent | sin | 2 | NA |
| 832 | 156.86 | temperature | 25 | 14400 | < th | dose independent | rect. | 8 | 14 |