BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0230500 Os07g0230500|Os07g0230500
         (441 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G30350.2  | chr2:12934237-12935742 REVERSE LENGTH=369          254   6e-68
AT5G43210.1  | chr5:17347567-17348379 FORWARD LENGTH=171           58   8e-09

>AT2G30350.2 | chr2:12934237-12935742 REVERSE LENGTH=369
          Length = 368

 Score =  254 bits (649), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 117/173 (67%), Positives = 133/173 (76%), Gaps = 2/173 (1%)

Query: 63  FFCCYLLRSLCPRRKGSTYIGFTVNPRRRIRQHNGEIRCGAWQTKRGRPWEMVLCIYGFP 122
           FF CYLL SL PR KG TYIGFTVNPRRRIRQHNGEI  GAW+TK+ RPWEMVLCIYGFP
Sbjct: 27  FFACYLLTSLSPRHKGQTYIGFTVNPRRRIRQHNGEITSGAWRTKKKRPWEMVLCIYGFP 86

Query: 123 TNVAALQFEWAWQHPTESLAVRKAAASFKSLGGVGSKVKLAYTMLNLPSWENLNLTVNFF 182
           TNV+ALQFEWAWQHP ES+AVR+AAA+FKS  GV SK+KL YTMLNLP+W +LNLTVN+F
Sbjct: 87  TNVSALQFEWAWQHPRESVAVREAAAAFKSFSGVASKIKLVYTMLNLPAWNSLNLTVNYF 146

Query: 183 STKNTKFAAGCPPLPGHMKTAVCSLEDLQYCTDGVSSEEDNNVDEPPPKKNHQ 235
           S+K        P LP HMK  VC++EDLQY T    S +    DE  P+ N +
Sbjct: 147 SSKYAHHGGKSPSLPLHMKVQVCAMEDLQYFTKVDDSSQPE--DEESPEVNEE 197



>AT5G43210.1 | chr5:17347567-17348379 FORWARD LENGTH=171
          Length = 170

 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 36/66 (54%)

Query: 80  TYIGFTVNPRRRIRQHNGEIRCGAWQTKRGRPWEMVLCIYGFPTNVAALQFEWAWQHPTE 139
           TY+G T +  RR++QHNGEIR GA  +  GRPW     I GF     A  FE  W+  T 
Sbjct: 68  TYVGITTDFSRRLKQHNGEIRGGAKASSAGRPWLCACIITGFTCLSQASSFESKWKIFTR 127

Query: 140 SLAVRK 145
            L  RK
Sbjct: 128 KLPRRK 133



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.132    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,579,576
Number of extensions: 437815
Number of successful extensions: 973
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 973
Number of HSP's successfully gapped: 2
Length of query: 441
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 339
Effective length of database: 8,310,137
Effective search space: 2817136443
Effective search space used: 2817136443
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 113 (48.1 bits)