BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0230500 Os07g0230500|Os07g0230500
         (441 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0230500  Excinuclease ABC, C subunit, N-terminal domain...   791   0.0  

>Os07g0230500 Excinuclease ABC, C subunit, N-terminal domain containing protein
          Length = 441

 Score =  791 bits (2043), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/379 (100%), Positives = 379/379 (100%)

Query: 63  FFCCYLLRSLCPRRKGSTYIGFTVNPRRRIRQHNGEIRCGAWQTKRGRPWEMVLCIYGFP 122
           FFCCYLLRSLCPRRKGSTYIGFTVNPRRRIRQHNGEIRCGAWQTKRGRPWEMVLCIYGFP
Sbjct: 63  FFCCYLLRSLCPRRKGSTYIGFTVNPRRRIRQHNGEIRCGAWQTKRGRPWEMVLCIYGFP 122

Query: 123 TNVAALQFEWAWQHPTESLAVRKAAASFKSLGGVGSKVKLAYTMLNLPSWENLNLTVNFF 182
           TNVAALQFEWAWQHPTESLAVRKAAASFKSLGGVGSKVKLAYTMLNLPSWENLNLTVNFF
Sbjct: 123 TNVAALQFEWAWQHPTESLAVRKAAASFKSLGGVGSKVKLAYTMLNLPSWENLNLTVNFF 182

Query: 183 STKNTKFAAGCPPLPGHMKTAVCSLEDLQYCTDGVSSEEDNNVDEPPPKKNHQEPDDAHA 242
           STKNTKFAAGCPPLPGHMKTAVCSLEDLQYCTDGVSSEEDNNVDEPPPKKNHQEPDDAHA
Sbjct: 183 STKNTKFAAGCPPLPGHMKTAVCSLEDLQYCTDGVSSEEDNNVDEPPPKKNHQEPDDAHA 242

Query: 243 PARDELSVSEHGLVQLPEEEIRNAGNESDYDDFAPIDWSVFGAAEARGLDESSEHDEWMG 302
           PARDELSVSEHGLVQLPEEEIRNAGNESDYDDFAPIDWSVFGAAEARGLDESSEHDEWMG
Sbjct: 243 PARDELSVSEHGLVQLPEEEIRNAGNESDYDDFAPIDWSVFGAAEARGLDESSEHDEWMG 302

Query: 303 QEDNPLFEAQPLEHETRTAASAVSDAECSTDELGYMSWSGIHETTRESDGSATSPRCSSG 362
           QEDNPLFEAQPLEHETRTAASAVSDAECSTDELGYMSWSGIHETTRESDGSATSPRCSSG
Sbjct: 303 QEDNPLFEAQPLEHETRTAASAVSDAECSTDELGYMSWSGIHETTRESDGSATSPRCSSG 362

Query: 363 LSSDDEGGRILDGVSGQISSPFPYVGRSSSSDESGPAPLFLEKDVINLVTPIARRLGRKG 422
           LSSDDEGGRILDGVSGQISSPFPYVGRSSSSDESGPAPLFLEKDVINLVTPIARRLGRKG
Sbjct: 363 LSSDDEGGRILDGVSGQISSPFPYVGRSSSSDESGPAPLFLEKDVINLVTPIARRLGRKG 422

Query: 423 GGEMARIVDLTSSPIVIEL 441
           GGEMARIVDLTSSPIVIEL
Sbjct: 423 GGEMARIVDLTSSPIVIEL 441



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.132    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,788,019
Number of extensions: 739539
Number of successful extensions: 1748
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1748
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 337
Effective length of database: 11,605,545
Effective search space: 3911068665
Effective search space used: 3911068665
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 157 (65.1 bits)