Os07g0200700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Squalene synthase (EC 2.5.1.21).
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Os07g0200700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Squalene synthase (EC 2.5.1.21).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.45 | 0.33 | 9.78 | -1.46 | 1.37 | -0.805 | 0.406 | 0.893 | 0.0463 | 2.74 | 25.7 | 10 | -- | -- |
| 49.56 | 0.33 | 9.79 | -1.56 | 1.38 | -0.743 | 0.294 | -- | 0.0236 | 2.74 | 25.7 | 10 | -- | -- |
| 49.79 | 0.331 | 9.78 | -1.52 | 1.37 | -0.8 | -- | 0.424 | 0.0338 | 2.74 | 25.7 | 10 | -- | -- |
| 49.86 | 0.331 | 9.79 | -1.56 | 1.37 | -0.763 | -- | -- | 0.023 | 2.73 | 25.7 | 10 | -- | -- |
| 116.63 | 0.503 | 9.73 | -1.17 | -- | -2.08 | -- | 1.26 | 0.246 | -- | 24.53 | 13 | -- | -- |
| 57.5 | 0.355 | 9.79 | -1.66 | 1.64 | -- | 0.518 | -- | -0.0139 | 2.76 | -- | -- | -- | -- |
| 58.42 | 0.358 | 9.8 | -1.67 | 1.64 | -- | -- | -- | -0.0169 | 2.75 | -- | -- | -- | -- |
| 117.84 | 0.506 | 9.75 | -1.31 | -- | -1.99 | -- | -- | 0.215 | -- | 24.5 | 13 | -- | -- |
| 111.54 | 0.492 | 9.74 | -- | 1.17 | -1.13 | -- | -- | 0.243 | 2.67 | 25.06 | 15 | -- | -- |
| 215.08 | 0.685 | 9.79 | -1.6 | -- | -- | -- | -- | 0.0249 | -- | -- | -- | -- | -- |
| 131.89 | 0.537 | 9.76 | -- | 1.61 | -- | -- | -- | 0.169 | 2.74 | -- | -- | -- | -- |
| 162.11 | 0.593 | 9.71 | -- | -- | -2.18 | -- | -- | 0.393 | -- | 24.3 | 15 | -- | -- |
| 282.58 | 0.785 | 9.75 | -- | -- | -- | -- | -- | 0.202 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.20 | temperature | 15 | 720 | > th | dose dependent | rect. | 18 | 4 |
| 4 | 46.47 | humidity | 70 | 90 | > th | dose dependent | rect. | 3 | 19 |
| 10 | 46.66 | humidity | 60 | 270 | > th | dose dependent | rect. | 1 | 18 |
| 12 | 46.78 | humidity | 60 | 90 | > th | dose dependent | rect. | 3 | 16 |
| 16 | 46.87 | humidity | 70 | 10 | > th | dose dependent | rect. | 4 | 19 |
| 21 | 46.93 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 10 |
| 23 | 46.95 | humidity | 60 | 270 | > th | dose dependent | rect. | 24 | 21 |
| 44 | 47.34 | temperature | 30 | 270 | < th | dose independent | rect. | 1 | 18 |
| 49 | 47.40 | temperature | 20 | 90 | > th | dose dependent | rect. | 6 | 11 |
| 73 | 47.67 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 13 |
| 90 | 47.79 | humidity | 70 | 270 | > th | dose independent | rect. | 1 | 18 |
| 109 | 47.90 | temperature | 25 | 90 | > th | dose dependent | sin | 2 | NA |
| 130 | 47.98 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 14 |
| 136 | 48.03 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 4 |
| 154 | 48.12 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 16 |
| 156 | 48.13 | temperature | 20 | 90 | > th | dose independent | rect. | 17 | 14 |
| 167 | 48.15 | temperature | 25 | 90 | > th | dose dependent | rect. | 4 | 13 |
| 214 | 48.33 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 1 |
| 215 | 48.33 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 5 |
| 219 | 48.34 | temperature | 30 | 90 | < th | dose independent | rect. | 3 | 19 |
| 227 | 48.36 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 22 |
| 234 | 48.39 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 5 |
| 236 | 48.40 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 4 |
| 249 | 48.44 | humidity | 80 | 90 | > th | dose independent | rect. | 3 | 16 |
| 259 | 48.48 | temperature | 20 | 10 | > th | dose independent | rect. | 18 | 13 |
| 274 | 48.53 | humidity | 80 | 90 | > th | dose independent | rect. | 3 | 19 |
| 275 | 48.53 | radiation | 20 | 270 | < th | dose dependent | rect. | 24 | 22 |
| 312 | 48.64 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 10 |
| 353 | 48.74 | radiation | 40 | 270 | < th | dose dependent | rect. | 13 | 16 |
| 359 | 48.75 | radiation | 40 | 270 | < th | dose dependent | rect. | 1 | 14 |
| 406 | 48.82 | radiation | 20 | 270 | < th | dose dependent | rect. | 1 | 18 |
| 422 | 48.88 | humidity | 90 | 270 | > th | dose independent | rect. | 1 | 20 |
| 436 | 48.91 | temperature | 25 | 720 | > th | dose independent | rect. | 18 | 4 |
| 442 | 48.93 | humidity | 60 | 10 | > th | dose dependent | rect. | 4 | 12 |
| 518 | 49.05 | temperature | 30 | 10 | < th | dose independent | rect. | 4 | 19 |
| 544 | 49.09 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 14 |
| 553 | 49.11 | humidity | 70 | 90 | > th | dose dependent | sin | 1 | NA |
| 564 | 49.13 | radiation | 10 | 270 | < th | dose independent | rect. | 24 | 22 |
| 573 | 49.14 | temperature | 30 | 10 | < th | dose dependent | rect. | 20 | 8 |
| 660 | 49.26 | radiation | 10 | 270 | < th | dose independent | rect. | 1 | 18 |
| 661 | 49.26 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 14 |
| 755 | 49.36 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 20 |
| 771 | 49.40 | humidity | 70 | 270 | > th | dose independent | rect. | 10 | 9 |
| 778 | 49.40 | temperature | 30 | 30 | < th | dose dependent | rect. | 4 | 15 |
| 818 | 49.44 | humidity | 60 | 10 | > th | dose dependent | rect. | 4 | 10 |
| 830 | 49.46 | radiation | 40 | 270 | < th | dose independent | rect. | 1 | 14 |
| 834 | 49.46 | temperature | 30 | 30 | < th | dose dependent | rect. | 4 | 12 |
| 848 | 49.47 | radiation | 20 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 901 | 49.54 | radiation | 10 | 270 | < th | dose independent | rect. | 1 | 15 |
| 972 | 49.61 | radiation | 20 | 270 | < th | dose independent | rect. | 13 | 16 |