BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0200700 Os07g0200700|AK063341
         (410 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0200700  Similar to Squalene synthase (EC 2.5.1.21)          759   0.0  
Os03g0805100  Similar to Squalene synthase (EC 2.5.1.21)          624   e-179

>Os07g0200700 Similar to Squalene synthase (EC 2.5.1.21)
          Length = 410

 Score =  759 bits (1959), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/389 (94%), Positives = 367/389 (94%)

Query: 1   MGVVGALLGPXXXXXXXXXXXXXXXXXXXXXXTDDDEHWAFAYSMLHRVSRSFAIVIQQL 60
           MGVVGALLGP                      TDDDEHWAFAYSMLHRVSRSFAIVIQQL
Sbjct: 1   MGVVGALLGPEAEALVRLRAAAWRLRREVAAATDDDEHWAFAYSMLHRVSRSFAIVIQQL 60

Query: 61  GPDLRNAVCVFYLVLRALDTVEDDTSIPTEIKVPILQEFHRHIYNRDWHFSCGTKDCKIL 120
           GPDLRNAVCVFYLVLRALDTVEDDTSIPTEIKVPILQEFHRHIYNRDWHFSCGTKDCKIL
Sbjct: 61  GPDLRNAVCVFYLVLRALDTVEDDTSIPTEIKVPILQEFHRHIYNRDWHFSCGTKDCKIL 120

Query: 121 MDKFHYVLTAFLELGSGYQEAIEEITRRMGAGMAKFICKEVETVDDYDEYCHYVAGLVGI 180
           MDKFHYVLTAFLELGSGYQEAIEEITRRMGAGMAKFICKEVETVDDYDEYCHYVAGLVGI
Sbjct: 121 MDKFHYVLTAFLELGSGYQEAIEEITRRMGAGMAKFICKEVETVDDYDEYCHYVAGLVGI 180

Query: 181 GLSRLFHAAGLEDLAPESLSNSMGLFLQKVNITRDYLEDINEIPKSRMFWPREIWSKYVD 240
           GLSRLFHAAGLEDLAPESLSNSMGLFLQKVNITRDYLEDINEIPKSRMFWPREIWSKYVD
Sbjct: 181 GLSRLFHAAGLEDLAPESLSNSMGLFLQKVNITRDYLEDINEIPKSRMFWPREIWSKYVD 240

Query: 241 KLEDLKYENNSVKAVKCLNEMVTNGLIHTEDCLRYMSALKDITILRFCAIPQVMALATYA 300
           KLEDLKYENNSVKAVKCLNEMVTNGLIHTEDCLRYMSALKDITILRFCAIPQVMALATYA
Sbjct: 241 KLEDLKYENNSVKAVKCLNEMVTNGLIHTEDCLRYMSALKDITILRFCAIPQVMALATYA 300

Query: 301 LCYNNVNVFRGVVKLRRGLTARIINETNSMADVYTAFYEFSSLLAEKIDDNDPNASLTRK 360
           LCYNNVNVFRGVVKLRRGLTARIINETNSMADVYTAFYEFSSLLAEKIDDNDPNASLTRK
Sbjct: 301 LCYNNVNVFRGVVKLRRGLTARIINETNSMADVYTAFYEFSSLLAEKIDDNDPNASLTRK 360

Query: 361 RVNAIKETCKSSGLLKIRGYDLDRPKRNP 389
           RVNAIKETCKSSGLLKIRGYDLDRPKRNP
Sbjct: 361 RVNAIKETCKSSGLLKIRGYDLDRPKRNP 389



>Os03g0805100 Similar to Squalene synthase (EC 2.5.1.21)
          Length = 403

 Score =  624 bits (1610), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 293/353 (83%), Positives = 321/353 (90%)

Query: 36  DEHWAFAYSMLHRVSRSFAIVIQQLGPDLRNAVCVFYLVLRALDTVEDDTSIPTEIKVPI 95
           +EHWAFAY+ML RVSRSFA+VIQQLGPDLRNAVC+FYLVLRALDTVEDDTSIP  +KVPI
Sbjct: 30  EEHWAFAYTMLQRVSRSFALVIQQLGPDLRNAVCIFYLVLRALDTVEDDTSIPAAVKVPI 89

Query: 96  LQEFHRHIYNRDWHFSCGTKDCKILMDKFHYVLTAFLELGSGYQEAIEEITRRMGAGMAK 155
           L+EFHRHIYNRDWH+SCGTKD K+LMDKF  V TAFLELG GYQEAIEEITR MGAGMAK
Sbjct: 90  LKEFHRHIYNRDWHYSCGTKDYKLLMDKFRLVSTAFLELGQGYQEAIEEITRLMGAGMAK 149

Query: 156 FICKEVETVDDYDEYCHYVAGLVGIGLSRLFHAAGLEDLAPESLSNSMGLFLQKVNITRD 215
           FICKEVETVDDY+EYCHYVAGLVG GLSRLFHA G EDLA +SLSNSMGLFLQK+NI RD
Sbjct: 150 FICKEVETVDDYNEYCHYVAGLVGYGLSRLFHAGGTEDLASDSLSNSMGLFLQKINIIRD 209

Query: 216 YLEDINEIPKSRMFWPREIWSKYVDKLEDLKYENNSVKAVKCLNEMVTNGLIHTEDCLRY 275
           YLEDINEIPKSRMFWPREIWSKYV+KLEDLKYE NS KAV+CLN+MVTN L H EDCL+Y
Sbjct: 210 YLEDINEIPKSRMFWPREIWSKYVNKLEDLKYEENSEKAVQCLNDMVTNALSHAEDCLQY 269

Query: 276 MSALKDITILRFCAIPQVMALATYALCYNNVNVFRGVVKLRRGLTARIINETNSMADVYT 335
           MSALKD  I RFCAIPQ+MA+ T A+CYNNVNVFRGVVK+RRGLTAR+I+ETN+M+DVYT
Sbjct: 270 MSALKDHAIFRFCAIPQIMAIGTCAICYNNVNVFRGVVKMRRGLTARVIDETNTMSDVYT 329

Query: 336 AFYEFSSLLAEKIDDNDPNASLTRKRVNAIKETCKSSGLLKIRGYDLDRPKRN 388
           AFYEFSSL+  KID+NDPNASLTRKRV+AIK TCKSS  LK RGYDL++ K N
Sbjct: 330 AFYEFSSLIESKIDNNDPNASLTRKRVDAIKRTCKSSCSLKRRGYDLEKSKYN 382



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.138    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,708,919
Number of extensions: 460295
Number of successful extensions: 1059
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1058
Number of HSP's successfully gapped: 2
Length of query: 410
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 307
Effective length of database: 11,657,759
Effective search space: 3578932013
Effective search space used: 3578932013
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 157 (65.1 bits)