Os07g0168800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, A20-type domain containing protein.
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Os07g0168800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, A20-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.93 | 0.367 | 10.6 | -1.14 | 0.869 | 1.99 | 0.00425 | -8.03 | -0.431 | 10.4 | 28.46 | 352 | -- | -- |
| 63.71 | 0.372 | 10.5 | -0.557 | 0.914 | 1.11 | -0.0247 | -- | -0.407 | 10.4 | 27.93 | 418 | -- | -- |
| 60.9 | 0.363 | 10.6 | -1.13 | 0.877 | 1.97 | -- | -7.84 | -0.434 | 10.3 | 28.43 | 365 | -- | -- |
| 63.55 | 0.371 | 10.5 | -0.518 | 0.893 | 1.09 | -- | -- | -0.38 | 10.5 | 27.99 | 409 | -- | -- |
| 100.66 | 0.467 | 10.6 | -1.09 | -- | 1.84 | -- | -7.3 | -0.481 | -- | 27.69 | 189 | -- | -- |
| 84.41 | 0.431 | 10.5 | -0.374 | 0.849 | -- | -0.12 | -- | -0.4 | 12.2 | -- | -- | -- | -- |
| 84.47 | 0.43 | 10.5 | -0.378 | 0.849 | -- | -- | -- | -0.401 | 12.2 | -- | -- | -- | -- |
| 94.77 | 0.455 | 10.6 | -0.646 | -- | 1.26 | -- | -- | -0.613 | -- | 19.69 | 9 | -- | -- |
| 70.38 | 0.391 | 10.5 | -- | 0.885 | 1.04 | -- | -- | -0.315 | 10.7 | 28.4 | 412 | -- | -- |
| 129.85 | 0.532 | 10.5 | -0.406 | -- | -- | -- | -- | -0.414 | -- | -- | -- | -- | -- |
| 88.25 | 0.439 | 10.5 | -- | 0.854 | -- | -- | -- | -0.359 | 12.2 | -- | -- | -- | -- |
| 104.85 | 0.478 | 10.6 | -- | -- | 1.1 | -- | -- | -0.517 | -- | 21.1 | 8 | -- | -- |
| 134.2 | 0.541 | 10.5 | -- | -- | -- | -- | -- | -0.368 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.86 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 6 |
| 3 | 59.12 | temperature | 25 | 90 | > th | dose dependent | rect. | 15 | 17 |
| 8 | 59.35 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 15 |
| 11 | 59.54 | temperature | 25 | 270 | > th | dose dependent | rect. | 12 | 20 |
| 13 | 59.73 | temperature | 25 | 90 | > th | dose dependent | rect. | 15 | 5 |
| 15 | 59.81 | temperature | 25 | 10 | > th | dose dependent | rect. | 16 | 16 |
| 16 | 59.82 | radiation | 1 | 90 | < th | dose independent | sin | 13 | NA |
| 18 | 59.85 | radiation | 1 | 90 | > th | dose independent | sin | 13 | NA |
| 21 | 59.95 | temperature | 25 | 270 | > th | dose dependent | rect. | 14 | 3 |
| 25 | 60.09 | humidity | 80 | 90 | < th | dose dependent | sin | 14 | NA |
| 28 | 60.16 | radiation | 1 | 90 | < th | dose dependent | sin | 13 | NA |
| 30 | 60.21 | temperature | 25 | 10 | > th | dose dependent | sin | 14 | NA |
| 36 | 60.28 | temperature | 30 | 270 | > th | dose independent | rect. | 13 | 6 |
| 65 | 60.46 | radiation | 1 | 270 | < th | dose independent | rect. | 5 | 22 |
| 70 | 60.56 | humidity | 80 | 270 | < th | dose dependent | rect. | 13 | 6 |
| 71 | 60.57 | humidity | 80 | 270 | < th | dose dependent | rect. | 13 | 8 |
| 89 | 60.75 | humidity | 80 | 90 | < th | dose dependent | rect. | 15 | 6 |
| 134 | 60.92 | temperature | 25 | 270 | > th | dose dependent | sin | 19 | NA |
| 136 | 60.94 | temperature | 30 | 270 | > th | dose independent | rect. | 14 | 3 |
| 141 | 60.96 | temperature | 30 | 270 | < th | dose independent | sin | 16 | NA |
| 150 | 61.00 | humidity | 80 | 90 | < th | dose dependent | rect. | 15 | 12 |
| 156 | 61.02 | humidity | 80 | 90 | < th | dose dependent | rect. | 15 | 16 |
| 157 | 61.03 | temperature | 30 | 270 | < th | dose independent | rect. | 16 | 11 |
| 162 | 61.04 | temperature | 25 | 270 | > th | dose dependent | rect. | 15 | 1 |
| 173 | 61.13 | temperature | 25 | 90 | > th | dose dependent | rect. | 15 | 13 |
| 175 | 61.14 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 5 |
| 187 | 61.23 | humidity | 60 | 270 | > th | dose independent | rect. | 16 | 11 |
| 189 | 61.26 | temperature | 30 | 270 | > th | dose independent | sin | 16 | NA |
| 231 | 61.54 | radiation | 1 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 254 | 61.80 | humidity | 80 | 270 | < th | dose dependent | sin | 17 | NA |
| 349 | 62.14 | humidity | 50 | 270 | > th | dose independent | rect. | 15 | 23 |
| 407 | 62.41 | humidity | 90 | 10 | < th | dose dependent | rect. | 16 | 4 |
| 419 | 62.46 | temperature | 30 | 90 | < th | dose independent | sin | 14 | NA |
| 457 | 62.56 | radiation | 1 | 90 | > th | dose independent | rect. | 16 | 15 |
| 475 | 62.65 | humidity | 70 | 90 | < th | dose independent | rect. | 15 | 16 |
| 488 | 62.71 | humidity | 70 | 90 | < th | dose independent | rect. | 15 | 5 |
| 500 | 62.71 | radiation | 1 | 270 | > th | dose independent | rect. | 10 | 22 |
| 506 | 62.75 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 15 |
| 513 | 62.79 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 19 |
| 534 | 62.82 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 546 | 62.87 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 21 |
| 613 | 62.99 | temperature | 20 | 30 | > th | dose dependent | rect. | 12 | 23 |
| 663 | 63.13 | humidity | 80 | 10 | < th | dose dependent | rect. | 16 | 16 |
| 773 | 63.42 | humidity | 50 | 270 | > th | dose dependent | rect. | 8 | 17 |
| 774 | 63.42 | humidity | 50 | 270 | > th | dose dependent | rect. | 7 | 19 |
| 775 | 63.43 | humidity | 70 | 90 | > th | dose independent | sin | 14 | NA |
| 831 | 63.50 | humidity | 50 | 90 | > th | dose dependent | sin | 16 | NA |
| 841 | 63.53 | humidity | 50 | 270 | > th | dose dependent | rect. | 8 | 15 |
| 865 | 63.56 | radiation | 10 | 270 | < th | dose dependent | rect. | 16 | 11 |
| 974 | 63.70 | radiation | 1 | 270 | > th | dose independent | rect. | 13 | 17 |