Os07g0164000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Double-stranded RNA binding domain containing protein.
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Os07g0164000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Double-stranded RNA binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.47 | 0.291 | 10.4 | 1.53 | 1.52 | -0.672 | -0.0631 | -0.0189 | 0.535 | 17.3 | 29.6 | 89 | -- | -- |
| 38.47 | 0.289 | 10.4 | 1.52 | 1.52 | -0.672 | -0.059 | -- | 0.534 | 17.3 | 29.61 | 87 | -- | -- |
| 38.48 | 0.289 | 10.4 | 1.52 | 1.52 | -0.67 | -- | 0.00127 | 0.535 | 17.3 | 29.6 | 85 | -- | -- |
| 38.48 | 0.289 | 10.4 | 1.52 | 1.52 | -0.67 | -- | -- | 0.534 | 17.4 | 29.6 | 85 | -- | -- |
| 125.93 | 0.523 | 10.4 | 1.21 | -- | -2.16 | -- | -0.116 | 0.341 | -- | 50.42 | 233 | -- | -- |
| 44.48 | 0.313 | 10.3 | 1.69 | 1.7 | -- | 0.0127 | -- | 0.668 | 17 | -- | -- | -- | -- |
| 44.49 | 0.312 | 10.3 | 1.69 | 1.7 | -- | -- | -- | 0.668 | 17 | -- | -- | -- | -- |
| 125.93 | 0.523 | 10.4 | 1.19 | -- | -2.17 | -- | -- | 0.336 | -- | 57.26 | 231 | -- | -- |
| 94.95 | 0.456 | 10.4 | -- | 1.39 | -1.27 | -- | -- | 0.261 | 17.9 | 29.47 | 204 | -- | -- |
| 195.4 | 0.653 | 10.3 | 1.63 | -- | -- | -- | -- | 0.625 | -- | -- | -- | -- | -- |
| 119.63 | 0.512 | 10.4 | -- | 1.67 | -- | -- | -- | 0.48 | 17.1 | -- | -- | -- | -- |
| 159.91 | 0.589 | 10.4 | -- | -- | -2.38 | -- | -- | 0.11 | -- | 31.64 | 234 | -- | -- |
| 265.26 | 0.76 | 10.4 | -- | -- | -- | -- | -- | 0.444 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.34 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 4 | 17 |
| 2 | 33.38 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 3 | 33.52 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 6 | 33.63 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 8 | 20 |
| 11 | 33.77 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 18 |
| 29 | 34.21 | temperature | 25.0 | 90 | < th | dose independent | rect. | 4 | 17 |
| 36 | 34.43 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 18 |
| 97 | 35.29 | temperature | 25.0 | 270 | < th | dose independent | rect. | 2 | 18 |
| 157 | 35.86 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 164 | 35.90 | temperature | 25.0 | 90 | > th | dose independent | rect. | 8 | 16 |
| 168 | 35.93 | temperature | 25.0 | 90 | > th | dose independent | rect. | 8 | 11 |
| 175 | 35.97 | temperature | 25.0 | 90 | < th | dose independent | rect. | 11 | 10 |
| 181 | 36.01 | temperature | 25.0 | 10 | > th | dose independent | rect. | 8 | 12 |
| 209 | 36.15 | temperature | 25.0 | 90 | > th | dose independent | rect. | 8 | 18 |
| 227 | 36.27 | temperature | 25.0 | 10 | > th | dose independent | rect. | 8 | 16 |
| 242 | 36.39 | temperature | 25.0 | 10 | < th | dose independent | rect. | 11 | 11 |
| 260 | 36.46 | temperature | 30.0 | 10 | < th | dose dependent | sin | 23 | NA |
| 261 | 36.46 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 337 | 36.75 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 11 |
| 345 | 36.77 | radiation | 1.0 | 270 | < th | dose dependent | sin | 1 | NA |
| 346 | 36.78 | radiation | 20.0 | 270 | < th | dose independent | rect. | 15 | 15 |
| 361 | 36.82 | temperature | 25.0 | 90 | < th | dose independent | sin | 22 | NA |
| 362 | 36.82 | wind | 7.0 | 270 | < th | dose independent | rect. | 5 | 22 |
| 368 | 36.83 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 15 |
| 380 | 36.87 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 11 | 10 |
| 382 | 36.88 | wind | 7.0 | 90 | < th | dose independent | rect. | 8 | 20 |
| 386 | 36.89 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 11 |
| 402 | 36.92 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 8 | 13 |
| 412 | 36.95 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 2 | 18 |
| 420 | 36.98 | temperature | 25.0 | 90 | > th | dose independent | sin | 22 | NA |
| 431 | 37.01 | temperature | 25.0 | 10 | < th | dose independent | sin | 21 | NA |
| 466 | 37.13 | radiation | 1.0 | 270 | < th | dose independent | rect. | 2 | 18 |
| 474 | 37.15 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 11 | 11 |
| 520 | 37.24 | radiation | 1.0 | 270 | > th | dose independent | sin | 1 | NA |
| 561 | 37.34 | temperature | 25.0 | 10 | > th | dose independent | sin | 21 | NA |
| 567 | 37.34 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 11 | 21 |
| 606 | 37.42 | radiation | 1.0 | 270 | < th | dose independent | sin | 1 | NA |
| 607 | 37.42 | radiation | 1.0 | 270 | > th | dose independent | rect. | 6 | 13 |
| 635 | 37.46 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 684 | 37.56 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 9 | 21 |
| 729 | 37.69 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 763 | 37.76 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 23 | 6 |
| 780 | 37.78 | humidity | 50.0 | 270 | > th | dose independent | rect. | 16 | 14 |
| 788 | 37.79 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 10 |
| 794 | 37.80 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 5 | 4 |
| 881 | 37.93 | wind | 7.0 | 90 | < th | dose independent | rect. | 8 | 11 |
| 884 | 37.93 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 22 |
| 889 | 37.93 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 909 | 37.96 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 20 |
| 914 | 37.96 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 20 |
| 922 | 37.97 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 4 | 17 |
| 941 | 38.00 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 24 | 22 |