BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0164000 Os07g0164000|AK111609
(926 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G20910.1 | chr4:11186264-11190575 REVERSE LENGTH=943 649 0.0
AT4G20920.1 | chr4:11194177-11197577 REVERSE LENGTH=744 369 e-102
>AT4G20910.1 | chr4:11186264-11190575 REVERSE LENGTH=943
Length = 942
Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/947 (41%), Positives = 547/947 (57%), Gaps = 72/947 (7%)
Query: 20 TVTPKAVIHQKYGAKACYSVEEVREAVDGGCPGLALPQQTRSVYRCSLDIPGLTVVTPGT 79
T TPKA+IHQK+GAKA Y+VEEV ++ GC GLA+PQ+ +YRC L +P +VV+
Sbjct: 8 TPTPKAIIHQKFGAKASYTVEEVHDSSQSGCLGLAIPQKGPCLYRCHLQLPEFSVVS-NV 66
Query: 80 FVRKKDAEQAAAQIALDKLGIQPTANAPSTPEEAWDELIARISGFFTDENFPSSSHPLIG 139
F +KKD+EQ+AA++ALDKLGI+P N T +EA DE++ RI F+DE F S+ HPL
Sbjct: 67 FKKKKDSEQSAAELALDKLGIRPQ-NDDLTVDEARDEIVGRIKYIFSDE-FLSAEHPLGA 124
Query: 140 HMCVTFRRTGDRFGMIPMSAIAACDVKVIGLCKLIDPKAEFDPLLVLSLIYNAAKKSPGV 199
H+ RR G+R G +P+S IA D K+ CK+I+P E DP L +S + AA K
Sbjct: 125 HLRAALRRDGERCGSVPVSVIATVDAKINSRCKIINPSVESDPFLAISYVMKAAAKLADY 184
Query: 200 SVSDSNFWIWSQKPYSPEAVDLALQHWSGITDPIEVDGIFVPCMMEDEPKTIRLTLSHNE 259
V+ S + + Y E V+ H S EV +++PC+ E+ + L +S N
Sbjct: 185 IVA-SPHGLRRKNAYPSEIVEALATHVSDSLHSREVAAVYIPCIDEEVVELDTLYISSNR 243
Query: 260 HYMGDIVSKLSASDSSHAVVSRTVGKAS--SEIRLYFSAPNVQFVSEISHNVVSSLGDGY 317
HY+ I +L D + ++SR GKAS SE RLY P + + S+ +
Sbjct: 244 HYLDSIAERLGLKDGNQVMISRMFGKASCGSECRLYSEIPKKYLDNSSDASGTSNEDSSH 303
Query: 318 MESLINKRASFISGQTIYGDAILANVGYTRRDSELHTEDVTLSNYYRILLGKSPDGNYKI 377
+ N RAS+I GQ I+GDAILA+VGY + +L +DVT++++YRI G SP+G YKI
Sbjct: 304 IVKSRNARASYICGQDIHGDAILASVGYRWKSDDLDYDDVTVNSFYRICCGMSPNGIYKI 363
Query: 378 SRDSILVAELPSVYS-RSSWKGLSPRDLLCSFCRLHRLAEPYFAVN----RCASD----- 427
SR +++ A+LP ++ +S+W+G PR++L FC HRLAEP + + + SD
Sbjct: 364 SRQAVIAAQLPFAFTTKSNWRGPLPREILGLFCHQHRLAEPILSSSTAPVKSLSDIFRSH 423
Query: 428 ---------------GKNDKENPDM---FKCDVKIYSKKQELLLEYSTADTWSKESDAIH 469
+ ++ P + F+C+VKI++K Q+L+LE S + KE+DAI
Sbjct: 424 KKLKVSGVDDANENLSRQKEDTPGLGHGFRCEVKIFTKSQDLVLECSPRKFYEKENDAIQ 483
Query: 470 NSSLKVLIWFCSYFKQPNKHVLKLSHSKSTDGFTICPDNFLHEFAMFLSIYGNRGGDDSS 529
N+SLK L+WF +F + + S TD + + FA + + SS
Sbjct: 484 NASLKALLWFSKFFADLD---VDGEQSCDTDDDQDTKSSSPNVFAAPPILQ----KEHSS 536
Query: 530 ACSTVGSLSMDTSKQKLENNAVLAHIDGPDSGVFPSHGS-------------LTCISYTA 576
LS + Q + N +V++ V P + S Y+A
Sbjct: 537 ESKNTNVLSAEKRVQSITNGSVVSICYSLSLAVDPEYSSDGESPREDNESNEEMESEYSA 596
Query: 577 SLVVKDKTNRYTLESNNEFEFEIGTGAVKNQIESCVSQLSVNQSACFIAELPPKD----L 632
+ +++ +ESN E EFE+GTG++ IES V+Q++V + A F + P D L
Sbjct: 597 NC----ESSVELIESNEEIEFEVGTGSMNPHIESEVTQMTVGEYASF--RMTPPDAAEAL 650
Query: 633 ILAAANEFSHDLSKISRDNCFLEFSVKVLQVTEPLEDRMEKALFNPPLSKQRVEFAVRYI 692
ILA ++ S +S C L +++ +L V P E+RME A F PPLSKQRVE+A+++I
Sbjct: 651 ILAVGSDTVRIRSLLSERPC-LNYNILLLGVKGPSEERMEAAFFKPPLSKQRVEYALKHI 709
Query: 693 NELHATTLVDFXXXXXXXXXXXXEHPTTLEKVVGVDISRKGLTRAAXXXXXXXXXXXXMQ 752
E A+TLVDF ++PT+L+ ++GVDIS KGL RAA
Sbjct: 710 RESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEA--- 766
Query: 753 TSVPTAVLYDGSITDFDSRLYRFDIGTCLEVIEHVEEDQASLCGDVVLSSFCPTVLIVST 812
+V +A LYDGSI +FDSRL+ DIGTCLEVIEH+EEDQA G+ VLS F P +LIVST
Sbjct: 767 CNVKSATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPKLLIVST 826
Query: 813 PNYEYNPILQRSAMPNKEEEPEENAGPCKFRNHDHKFEWTRSQFQHWATGLAEKHNYSVE 872
PNYE+N ILQRS +EE E P KFRNHDHKFEWTR QF WA+ L ++HNYSVE
Sbjct: 827 PNYEFNTILQRSTPETQEENNSEPQLP-KFRNHDHKFEWTREQFNQWASKLGKRHNYSVE 885
Query: 873 FSGVGGSGD-EPGFASQIAVFRRMASGQDEVCQEGELHQPYELLWEW 918
FSGVGGSG+ EPGFASQIA+FRR AS + V + QPY+++WEW
Sbjct: 886 FSGVGGSGEVEPGFASQIAIFRREASSVENVAESS--MQPYKVIWEW 930
>AT4G20920.1 | chr4:11194177-11197577 REVERSE LENGTH=744
Length = 743
Score = 369 bits (948), Expect = e-102, Method: Compositional matrix adjust.
Identities = 261/783 (33%), Positives = 396/783 (50%), Gaps = 131/783 (16%)
Query: 20 TVTPKAVIHQKYGAKACYSVEEVREAVDGGCPGLALPQQTRSVYRCSLDIPGLTVVTPGT 79
T+TPK +I QK+G KA Y +EEV + + +YRC L +P +VV+
Sbjct: 8 TLTPKEMILQKFGVKAIYRIEEVHVSSND------------CLYRCHLQLPEFSVVS-NV 54
Query: 80 FVRKKDAEQAAAQIALDKLGIQP--TANAPSTPEEAWDELIARISGFFTDENFPSSSHPL 137
F RKKD+EQ+AA++AL+KLGIQ + T +EAW+ ++ RI F+DE F S HPL
Sbjct: 55 FKRKKDSEQSAAELALEKLGIQSQDDDDVDITVDEAWNNIVERIKYIFSDE-FLSVDHPL 113
Query: 138 IGHMCVTFRRTGDRFGMIPMSAIAACDVKVIGLCKLIDPKAEFDPLLVLSLIYNAAKKSP 197
GH+ +R G+R G +P+S IA D K+ CK+IDP E DP+L++S + AA K P
Sbjct: 114 GGHLRAALQRDGERCGSLPVSVIATFDAKINSRCKVIDPSVESDPILLMSYVMKAAAKLP 173
Query: 198 G-VSVSDSNFWIWSQKPYSPEAVD-LALQHWSGITDPIEVDGIFVPCMM--EDEPKTIRL 253
+ VS + +KPY P + LA H I+ + + + C + E+ K + L
Sbjct: 174 DYIVVSPHVDSLRRKKPYPPATIKALATTH----VKSIKAEAVHLQCTVGGEEVVKPVTL 229
Query: 254 TLSHNEHYMGDIVSKLSASDSSHAVVSRTVGKASS--EIRLYFSAPNVQ-----FVSEIS 306
+S +Y+ I KL D S ++SRT+GK SS E R+Y + P ++ + +
Sbjct: 230 DISSGRYYLDIIADKLGLKDGSQVMISRTIGKTSSGYECRVYAAIPKLKSSDNSWKAREK 289
Query: 307 HNVVSSLGDGYMESLINKRASFISGQTIYGDAILANVGYTRRDSELHTEDVTLSNYYRIL 366
++ S ++E N +ASF+ G I+GDAI+A+VGY +RI
Sbjct: 290 RPIIES---SHLEKSRNAKASFVCGVDIHGDAIVASVGYP----------------WRIC 330
Query: 367 LGKSPDGNYKISRDSILVAELP-SVYSRSSWKGLSPRDLLCSFCRLHRLAEPYFAVN--- 422
G SP+G YK+SR++I+ A+LP S ++S+W+G PR++LC FCR +L EP F ++
Sbjct: 331 CGISPNGIYKLSREAIIAAQLPFSFTTKSTWRGPFPREILCMFCRQQQLVEPIFTISTAP 390
Query: 423 --------------------------------------RCASDGKND-KENPDMFKCDVK 443
+ S GK + E+ ++C+VK
Sbjct: 391 VKPMSCILRSYQKLKDSECDEKDSECDEKDSECDDSEYQYTSKGKEEIPESGTGYRCEVK 450
Query: 444 IYSKKQELLLEYSTADTWSKESDAIHNSSLKVLIWFCSYFKQPNKHVLKLSHSKSTDGF- 502
I SK Q+L+L+ S+ + KE+ AI N+SL L W F + + L++ + TD
Sbjct: 451 ILSKSQDLVLDCSSRKFYEKENHAIQNASLNALSWLSRLFDEGDGDPLQICY---TDDHL 507
Query: 503 -TICPDNFLHEFAMFLSIYGNRGGDDSSACSTVGSLSMDTSKQKLENNAVLAHIDGPDSG 561
+ L + A+ + NR M+ + ++ +
Sbjct: 508 DAVFQQRILMKEAVPKGHFRNRD-------------EMNQYEDQVRIQTI---------- 544
Query: 562 VFPSHGSLTCISYTASLVV-----KD-KTNRYTLESNNEFEFEIGTGAVKNQIESCVSQL 615
+ GSL I Y+ L V KD K+ + +ESN E EFE+G G++ +E+ V+QL
Sbjct: 545 ---TKGSLVSICYSVYLDVDADFSKDGKSKKELIESNEEIEFEVGNGSMNPHLEAVVTQL 601
Query: 616 SVNQSACFIAELPPKDLILAAANEFSHDLSKISRDNCFLEFSVKVLQVTEPLEDRMEKAL 675
V Q A F+ P +DL + AA D S +S D E+ V++L V P E R+E
Sbjct: 602 VVGQYARFLTNAPAEDLFVTAATGTQRDRSLLS-DVAGFEYCVRLLGVKGPTEKRIEADF 660
Query: 676 FNPPLSKQRVEFAVRYINELHATTLVDFXXXXXXXXXXXXEHPTTLEKVVGVDISRKGLT 735
F P LSKQR+E+ V++I E A+TLVDF + PT+L+ + GVDIS K LT
Sbjct: 661 FKPSLSKQRLEYVVKHIKESSASTLVDFGCGSGSLLASILDCPTSLQTIAGVDISHKSLT 720
Query: 736 RAA 738
RAA
Sbjct: 721 RAA 723
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.133 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 20,606,208
Number of extensions: 888023
Number of successful extensions: 1895
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1875
Number of HSP's successfully gapped: 4
Length of query: 926
Length of database: 11,106,569
Length adjustment: 108
Effective length of query: 818
Effective length of database: 8,145,641
Effective search space: 6663134338
Effective search space used: 6663134338
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 116 (49.3 bits)