BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0164000 Os07g0164000|AK111609
         (926 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0164000  Double-stranded RNA binding domain containing ...  1837   0.0  

>Os07g0164000 Double-stranded RNA binding domain containing protein
          Length = 926

 Score = 1837 bits (4758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 894/926 (96%), Positives = 894/926 (96%)

Query: 1   MPXXXXXXXXSKRGMPAAPTVTPKAVIHQKYGAKACYSVEEVREAVDGGCPGLALPQQTR 60
           MP        SKRGMPAAPTVTPKAVIHQKYGAKACYSVEEVREAVDGGCPGLALPQQTR
Sbjct: 1   MPLRLRGGGGSKRGMPAAPTVTPKAVIHQKYGAKACYSVEEVREAVDGGCPGLALPQQTR 60

Query: 61  SVYRCSLDIPGLTVVTPGTFVRKKDAEQAAAQIALDKLGIQPTANAPSTPEEAWDELIAR 120
           SVYRCSLDIPGLTVVTPGTFVRKKDAEQAAAQIALDKLGIQPTANAPSTPEEAWDELIAR
Sbjct: 61  SVYRCSLDIPGLTVVTPGTFVRKKDAEQAAAQIALDKLGIQPTANAPSTPEEAWDELIAR 120

Query: 121 ISGFFTDENFPSSSHPLIGHMCVTFRRTGDRFGMIPMSAIAACDVKVIGLCKLIDPKAEF 180
           ISGFFTDENFPSSSHPLIGHMCVTFRRTGDRFGMIPMSAIAACDVKVIGLCKLIDPKAEF
Sbjct: 121 ISGFFTDENFPSSSHPLIGHMCVTFRRTGDRFGMIPMSAIAACDVKVIGLCKLIDPKAEF 180

Query: 181 DPLLVLSLIYNAAKKSPGVSVSDSNFWIWSQKPYSPEAVDLALQHWSGITDPIEVDGIFV 240
           DPLLVLSLIYNAAKKSPGVSVSDSNFWIWSQKPYSPEAVDLALQHWSGITDPIEVDGIFV
Sbjct: 181 DPLLVLSLIYNAAKKSPGVSVSDSNFWIWSQKPYSPEAVDLALQHWSGITDPIEVDGIFV 240

Query: 241 PCMMEDEPKTIRLTLSHNEHYMGDIVSKLSASDSSHAVVSRTVGKASSEIRLYFSAPNVQ 300
           PCMMEDEPKTIRLTLSHNEHYMGDIVSKLSASDSSHAVVSRTVGKASSEIRLYFSAPNVQ
Sbjct: 241 PCMMEDEPKTIRLTLSHNEHYMGDIVSKLSASDSSHAVVSRTVGKASSEIRLYFSAPNVQ 300

Query: 301 FVSEISHNVVSSLGDGYMESLINKRASFISGQTIYGDAILANVGYTRRDSELHTEDVTLS 360
           FVSEISHNVVSSLGDGYMESLINKRASFISGQTIYGDAILANVGYTRRDSELHTEDVTLS
Sbjct: 301 FVSEISHNVVSSLGDGYMESLINKRASFISGQTIYGDAILANVGYTRRDSELHTEDVTLS 360

Query: 361 NYYRILLGKSPDGNYKISRDSILVAELPSVYSRSSWKGLSPRDLLCSFCRLHRLAEPYFA 420
           NYYRILLGKSPDGNYKISRDSILVAELPSVYSRSSWKGLSPRDLLCSFCRLHRLAEPYFA
Sbjct: 361 NYYRILLGKSPDGNYKISRDSILVAELPSVYSRSSWKGLSPRDLLCSFCRLHRLAEPYFA 420

Query: 421 VNRCASDGKNDKENPDMFKCDVKIYSKKQELLLEYSTADTWSKESDAIHNSSLKVLIWFC 480
           VNRCASDGKNDKENPDMFKCDVKIYSKKQELLLEYSTADTWSKESDAIHNSSLKVLIWFC
Sbjct: 421 VNRCASDGKNDKENPDMFKCDVKIYSKKQELLLEYSTADTWSKESDAIHNSSLKVLIWFC 480

Query: 481 SYFKQPNKHVLKLSHSKSTDGFTICPDNFLHEFAMFLSIYGNRGGDDSSACSTVGSLSMD 540
           SYFKQPNKHVLKLSHSKSTDGFTICPDNFLHEFAMFLSIYGNRGGDDSSACSTVGSLSMD
Sbjct: 481 SYFKQPNKHVLKLSHSKSTDGFTICPDNFLHEFAMFLSIYGNRGGDDSSACSTVGSLSMD 540

Query: 541 TSKQKLENNAVLAHIDGPDSGVFPSHGSLTCISYTASLVVKDKTNRYTLESNNEFEFEIG 600
           TSKQKLENNAVLAHIDGPDSGVFPSHGSLTCISYTASLVVKDKTNRYTLESNNEFEFEIG
Sbjct: 541 TSKQKLENNAVLAHIDGPDSGVFPSHGSLTCISYTASLVVKDKTNRYTLESNNEFEFEIG 600

Query: 601 TGAVKNQIESCVSQLSVNQSACFIAELPPKDLILAAANEFSHDLSKISRDNCFLEFSVKV 660
           TGAVKNQIESCVSQLSVNQSACFIAELPPKDLILAAANEFSHDLSKISRDNCFLEFSVKV
Sbjct: 601 TGAVKNQIESCVSQLSVNQSACFIAELPPKDLILAAANEFSHDLSKISRDNCFLEFSVKV 660

Query: 661 LQVTEPLEDRMEKALFNPPLSKQRVEFAVRYINELHATTLVDFXXXXXXXXXXXXEHPTT 720
           LQVTEPLEDRMEKALFNPPLSKQRVEFAVRYINELHATTLVDF            EHPTT
Sbjct: 661 LQVTEPLEDRMEKALFNPPLSKQRVEFAVRYINELHATTLVDFGCGSGSLLDSLLEHPTT 720

Query: 721 LEKVVGVDISRKGLTRAAXXXXXXXXXXXXMQTSVPTAVLYDGSITDFDSRLYRFDIGTC 780
           LEKVVGVDISRKGLTRAA            MQTSVPTAVLYDGSITDFDSRLYRFDIGTC
Sbjct: 721 LEKVVGVDISRKGLTRAAKSLHQKLSKKSLMQTSVPTAVLYDGSITDFDSRLYRFDIGTC 780

Query: 781 LEVIEHVEEDQASLCGDVVLSSFCPTVLIVSTPNYEYNPILQRSAMPNKEEEPEENAGPC 840
           LEVIEHVEEDQASLCGDVVLSSFCPTVLIVSTPNYEYNPILQRSAMPNKEEEPEENAGPC
Sbjct: 781 LEVIEHVEEDQASLCGDVVLSSFCPTVLIVSTPNYEYNPILQRSAMPNKEEEPEENAGPC 840

Query: 841 KFRNHDHKFEWTRSQFQHWATGLAEKHNYSVEFSGVGGSGDEPGFASQIAVFRRMASGQD 900
           KFRNHDHKFEWTRSQFQHWATGLAEKHNYSVEFSGVGGSGDEPGFASQIAVFRRMASGQD
Sbjct: 841 KFRNHDHKFEWTRSQFQHWATGLAEKHNYSVEFSGVGGSGDEPGFASQIAVFRRMASGQD 900

Query: 901 EVCQEGELHQPYELLWEWPNASLPSH 926
           EVCQEGELHQPYELLWEWPNASLPSH
Sbjct: 901 EVCQEGELHQPYELLWEWPNASLPSH 926



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 31,783,081
Number of extensions: 1335961
Number of successful extensions: 2614
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2614
Number of HSP's successfully gapped: 1
Length of query: 926
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 816
Effective length of database: 11,292,261
Effective search space: 9214484976
Effective search space used: 9214484976
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 161 (66.6 bits)