Os07g0124800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Chaperone protein dnaJ.
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Os07g0124800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Chaperone protein dnaJ.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.77 | 0.238 | 10.6 | -1.23 | 0.625 | -0.0326 | -0.167 | -1.33 | -0.0982 | 2.6 | 19.74 | 1862 | -- | -- |
| 28.19 | 0.249 | 10.6 | -1.02 | 0.659 | 0.19 | -0.214 | -- | -0.0478 | 2.54 | 19.34 | 3266 | -- | -- |
| 25.84 | 0.237 | 10.6 | -1.25 | 0.619 | -0.0187 | -- | -1.26 | -0.0989 | 2.61 | 20.24 | 1890 | -- | -- |
| 27.81 | 0.247 | 10.6 | -1.03 | 0.648 | 0.321 | -- | -- | -0.0439 | 2.56 | 18.48 | 3169 | -- | -- |
| 48.05 | 0.323 | 10.6 | -1.25 | -- | 0.0696 | -- | -1.17 | -0.124 | -- | 20.4 | 2513 | -- | -- |
| 29.27 | 0.254 | 10.6 | -0.96 | 0.624 | -- | -0.175 | -- | -0.0198 | 2.64 | -- | -- | -- | -- |
| 29.37 | 0.254 | 10.6 | -0.955 | 0.623 | -- | -- | -- | -0.0188 | 2.64 | -- | -- | -- | -- |
| 49.04 | 0.326 | 10.6 | -1.13 | -- | 0.482 | -- | -- | -0.0835 | -- | 17.9 | 2511 | -- | -- |
| 33.82 | 0.271 | 10.5 | -- | 0.585 | -0.634 | -- | -- | 0.254 | 2.58 | 21.2 | 47520 | -- | -- |
| 52.07 | 0.337 | 10.6 | -0.929 | -- | -- | -- | -- | -0.00309 | -- | -- | -- | -- | -- |
| 53.42 | 0.342 | 10.6 | -- | 0.605 | -- | -- | -- | 0.0876 | 2.62 | -- | -- | -- | -- |
| 56.84 | 0.351 | 10.5 | -- | -- | -0.622 | -- | -- | 0.317 | -- | 22 | 46493 | -- | -- |
| 74.81 | 0.404 | 10.6 | -- | -- | -- | -- | -- | 0.0999 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.61 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 10 |
| 2 | 25.62 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 10 |
| 10 | 25.67 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 16 |
| 11 | 25.67 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 16 |
| 13 | 25.69 | temperature | 20 | 1440 | < th | dose independent | sin | 13 | NA |
| 18 | 25.70 | temperature | 20 | 1440 | > th | dose independent | sin | 13 | NA |
| 24 | 25.70 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 18 |
| 27 | 25.71 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 18 |
| 51 | 25.74 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 97 | 25.77 | radiation | 30 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 125 | 25.78 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 128 | 25.79 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 155 | 25.81 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 3 |
| 159 | 25.82 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 172 | 25.84 | radiation | 30 | 4320 | < th | dose independent | rect. | 20 | 12 |
| 184 | 25.85 | radiation | 30 | 4320 | < th | dose independent | rect. | 4 | 4 |
| 185 | 25.85 | radiation | 30 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 210 | 25.86 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 21 |
| 221 | 25.87 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 21 |
| 226 | 25.88 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 2 |
| 227 | 25.88 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 4 |
| 251 | 25.88 | humidity | 90 | 14400 | > th | dose dependent | rect. | 13 | 18 |
| 303 | 25.91 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 306 | 25.91 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 12 |
| 328 | 25.92 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 331 | 25.92 | radiation | 20 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 339 | 25.93 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 385 | 25.95 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 386 | 25.95 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 387 | 25.95 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 428 | 25.96 | temperature | 20 | 1440 | < th | dose independent | rect. | 7 | 23 |
| 431 | 25.96 | humidity | 90 | 14400 | > th | dose dependent | sin | 10 | NA |
| 466 | 25.97 | humidity | 90 | 14400 | > th | dose dependent | sin | 7 | NA |
| 496 | 25.98 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 23 |
| 504 | 25.98 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 16 |
| 525 | 25.99 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 569 | 26.01 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 10 |
| 570 | 26.01 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 11 |
| 583 | 26.01 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 598 | 26.02 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 2 |
| 613 | 26.02 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 694 | 26.06 | humidity | 90 | 14400 | > th | dose independent | sin | 11 | NA |
| 788 | 26.09 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 2 |
| 789 | 26.09 | radiation | 20 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 792 | 26.09 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 4 |
| 847 | 26.10 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 850 | 26.10 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 17 |
| 888 | 26.11 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 11 |
| 897 | 26.11 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 17 |
| 914 | 26.12 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 939 | 26.12 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 946 | 26.12 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 11 |
| 967 | 26.13 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 2 |
| 984 | 26.13 | temperature | 10 | 1440 | > th | dose dependent | sin | 13 | NA |