BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0124800 Os07g0124800|AK068837
(237 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0124800 Similar to Chaperone protein dnaJ 493 e-140
Os03g0728100 Heat shock protein DnaJ, N-terminal domain con... 165 3e-41
>Os07g0124800 Similar to Chaperone protein dnaJ
Length = 237
Score = 493 bits (1270), Expect = e-140, Method: Compositional matrix adjust.
Identities = 237/237 (100%), Positives = 237/237 (100%)
Query: 1 MDGRRNGEHQPTRWPPGAGVEERDNASSSPASILLFALIGATATTAAFGQLRRTMSWFYT 60
MDGRRNGEHQPTRWPPGAGVEERDNASSSPASILLFALIGATATTAAFGQLRRTMSWFYT
Sbjct: 1 MDGRRNGEHQPTRWPPGAGVEERDNASSSPASILLFALIGATATTAAFGQLRRTMSWFYT 60
Query: 61 QLSRSEPYVYWEDIPRRPNRRGEAWGQYYQRMREKSEDQRERVERIRHMQDMFKKERSKC 120
QLSRSEPYVYWEDIPRRPNRRGEAWGQYYQRMREKSEDQRERVERIRHMQDMFKKERSKC
Sbjct: 61 QLSRSEPYVYWEDIPRRPNRRGEAWGQYYQRMREKSEDQRERVERIRHMQDMFKKERSKC 120
Query: 121 RDYRTRDGHNPSYYQNSRREEWYWDAESFYANQRTNFRSMPREAMGYTMSQHYSILGLDR 180
RDYRTRDGHNPSYYQNSRREEWYWDAESFYANQRTNFRSMPREAMGYTMSQHYSILGLDR
Sbjct: 121 RDYRTRDGHNPSYYQNSRREEWYWDAESFYANQRTNFRSMPREAMGYTMSQHYSILGLDR 180
Query: 181 SRLEPFSDAEIKNAFRRKAMEYHPDQNQHNKEFAEAKFKEVMDSYEAIKLERQNGSL 237
SRLEPFSDAEIKNAFRRKAMEYHPDQNQHNKEFAEAKFKEVMDSYEAIKLERQNGSL
Sbjct: 181 SRLEPFSDAEIKNAFRRKAMEYHPDQNQHNKEFAEAKFKEVMDSYEAIKLERQNGSL 237
>Os03g0728100 Heat shock protein DnaJ, N-terminal domain containing protein
Length = 238
Score = 165 bits (418), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 97/207 (46%), Positives = 137/207 (66%), Gaps = 6/207 (2%)
Query: 33 ILLFALIGATATTAAFGQLRRTMSWFYTQLSRSEPYVYWEDIPRRPNRRG---EAWGQYY 89
IL+F LIGAT T A Q+RR++ W Y+Q ++ + W + NR +A +YY
Sbjct: 30 ILIFGLIGATTATFAVAQVRRSVDWVYSQFNKMQT-TSWRNASNSSNRGSFSEDARRRYY 88
Query: 90 QRMREKSEDQRERVERIRHMQDMFKKERSKCR-DYRT-RDGHNPSYYQNSRREEWYWDAE 147
QRM+++ E+++ERV+RIRHMQ +F +ER+K R Y R+ P Y R++WYW +
Sbjct: 89 QRMQQEYEEEQERVQRIRHMQSVFNRERNKFRRSYEAWRENGPPGGYNYVPRDDWYWQTD 148
Query: 148 SFYANQRTNFRSMPREAMGYTMSQHYSILGLDRSRLEPFSDAEIKNAFRRKAMEYHPDQN 207
+ ++ + P Y+MS HY++LGL+RSR P++DAE+KNAFR KAME HPDQN
Sbjct: 149 TSHSEHKNRRTYTPAGPRVYSMSHHYTVLGLNRSRTTPYTDAEVKNAFRTKAMEVHPDQN 208
Query: 208 QHNKEFAEAKFKEVMDSYEAIKLERQN 234
Q N+E AE +FKEV+ SYEAIKLER+N
Sbjct: 209 QDNREAAEERFKEVVKSYEAIKLERKN 235
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.130 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,621,185
Number of extensions: 352951
Number of successful extensions: 1401
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1403
Number of HSP's successfully gapped: 2
Length of query: 237
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 139
Effective length of database: 11,918,829
Effective search space: 1656717231
Effective search space used: 1656717231
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)