BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0124800 Os07g0124800|AK068837
(237 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G07990.1 | chr4:4825650-4828937 REVERSE LENGTH=231 178 2e-45
AT2G20560.1 | chr2:8848353-8849815 REVERSE LENGTH=338 54 5e-08
AT5G01390.1 | chr5:160500-162199 REVERSE LENGTH=336 54 5e-08
AT4G28480.1 | chr4:14073310-14075091 FORWARD LENGTH=349 54 7e-08
AT3G08910.1 | chr3:2710402-2711811 REVERSE LENGTH=324 52 2e-07
AT5G03160.1 | chr5:750286-752671 FORWARD LENGTH=483 50 1e-06
AT2G22360.1 | chr2:9498162-9500459 FORWARD LENGTH=443 49 2e-06
AT2G41000.2 | chr2:17111673-17112532 FORWARD LENGTH=212 49 2e-06
AT5G25530.1 | chr5:8889665-8890954 REVERSE LENGTH=348 49 3e-06
>AT4G07990.1 | chr4:4825650-4828937 REVERSE LENGTH=231
Length = 230
Score = 178 bits (452), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 106/223 (47%), Positives = 139/223 (62%), Gaps = 10/223 (4%)
Query: 13 RWPPGAGVEERDNASSSPASILLFALIGATATTAAFGQLRRTMSWFYTQLSRSEPYVYWE 72
+W P ++ D S P +L +I ATATT A QLRR W YTQL+R+ P
Sbjct: 10 KWNPPPPQQKPD---SRPWEVLAAFVICATATTFAVHQLRRNFDWVYTQLTRT-PSAGRG 65
Query: 73 DIPRRPNRRGEAWGQYYQRMREKSEDQRERVERIRHMQDMFKKERSKCR----DYRTRDG 128
R + + EAW +Y +RM+E+ ED+ ERV RIR MQ +F +ER+K R ++ D
Sbjct: 66 TF--RTSFQEEAWRRYNKRMQEEYEDELERVARIRRMQSVFNRERNKFRRGYENWTENDP 123
Query: 129 HNPSYYQNSRREEWYWDAESFYANQRTNFRSMPREAMGYTMSQHYSILGLDRSRLEPFSD 188
Y+Q +R +WYW ES + NQRTN + + Y +S HYS+LGL RSR P+++
Sbjct: 124 GAQQYHQQFQRHDWYWKTESSHRNQRTNHQEPSDQRRVYPLSHHYSVLGLSRSRATPYTE 183
Query: 189 AEIKNAFRRKAMEYHPDQNQHNKEFAEAKFKEVMDSYEAIKLE 231
AEIK AFR KA+E+HPDQNQ NK AEAKFKEV+ SYEAIK E
Sbjct: 184 AEIKKAFREKALEFHPDQNQDNKIVAEAKFKEVLLSYEAIKQE 226
>AT2G20560.1 | chr2:8848353-8849815 REVERSE LENGTH=338
Length = 337
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 42/57 (73%), Gaps = 4/57 (7%)
Query: 172 HYSILGLDRSRLEPFSDAEIKNAFRRKAMEYHPDQNQHNKEFAEAKFKEVMDSYEAI 228
+Y +L +DRS SD ++K A+R+ AM++HPD+N +NK+ AEA FK++ ++YE +
Sbjct: 5 YYKVLQVDRSA----SDDDLKKAYRKLAMKWHPDKNPNNKKDAEAMFKQISEAYEVL 57
>AT5G01390.1 | chr5:160500-162199 REVERSE LENGTH=336
Length = 335
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 42/56 (75%), Gaps = 4/56 (7%)
Query: 173 YSILGLDRSRLEPFSDAEIKNAFRRKAMEYHPDQNQHNKEFAEAKFKEVMDSYEAI 228
Y +L +DRS +D E+K A+R+ AM++HPD+N +NK+ AEAKFK++ ++Y+ +
Sbjct: 6 YKVLEVDRSA----NDDELKKAYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYDVL 57
>AT4G28480.1 | chr4:14073310-14075091 FORWARD LENGTH=349
Length = 348
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 43/57 (75%), Gaps = 4/57 (7%)
Query: 172 HYSILGLDRSRLEPFSDAEIKNAFRRKAMEYHPDQNQHNKEFAEAKFKEVMDSYEAI 228
+Y +L +DRS +D ++K A+R+ AM++HPD+N +NK+ AEAKFK++ ++Y+ +
Sbjct: 5 YYKVLQVDRSA----NDDDLKKAYRKLAMKWHPDKNPNNKKDAEAKFKQISEAYDVL 57
>AT3G08910.1 | chr3:2710402-2711811 REVERSE LENGTH=324
Length = 323
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 42/57 (73%), Gaps = 4/57 (7%)
Query: 172 HYSILGLDRSRLEPFSDAEIKNAFRRKAMEYHPDQNQHNKEFAEAKFKEVMDSYEAI 228
+Y +L +DR+ D ++K A+R+ AM++HPD+N +NK+ AEAKFK++ ++Y+ +
Sbjct: 5 YYKVLQVDRNA----KDDDLKKAYRKLAMKWHPDKNPNNKKDAEAKFKQISEAYDVL 57
>AT5G03160.1 | chr5:750286-752671 FORWARD LENGTH=483
Length = 482
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 39/56 (69%), Gaps = 4/56 (7%)
Query: 173 YSILGLDRSRLEPFSDAEIKNAFRRKAMEYHPDQNQHNKEFAEAKFKEVMDSYEAI 228
Y ILG+ R+ S +EIK A+++ A+++HPD+N N+E AE KF+E+ +YE +
Sbjct: 372 YKILGISRTA----SISEIKKAYKKLALQWHPDKNVGNREEAENKFREIAAAYEIL 423
>AT2G22360.1 | chr2:9498162-9500459 FORWARD LENGTH=443
Length = 442
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 20/109 (18%)
Query: 134 YQNSRREEWYWDAE--SFYANQRTNFRSM---------PREAMGYTM---SQHYSILGLD 179
+QNS + A S +++ F SM PR +T+ + +YS+LG+
Sbjct: 35 HQNSSSQVNCLGASKSSMFSHGSLPFLSMTGMSRNMHPPRRGSRFTVRADADYYSVLGVS 94
Query: 180 RSRLEPFSDAEIKNAFRRKAMEYHPDQNQHNKEFAEAKFKEVMDSYEAI 228
++ + AEIK+A+R+ A YHPD N+ AE KFKE+ ++YE +
Sbjct: 95 KNA----TKAEIKSAYRKLARNYHPDVNKDPG--AEEKFKEISNAYEVL 137
>AT2G41000.2 | chr2:17111673-17112532 FORWARD LENGTH=212
Length = 211
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 8/64 (12%)
Query: 169 MSQHYSILGLDRSRLEPFSDAEIKNAFRRKAMEYHPDQN----QHNKEFAEAKFKEVMDS 224
M HY +LG+ R+ + E+K+AFRR A++YHPD++ +H + A +FK V ++
Sbjct: 1 MVDHYQVLGVTRNATKK----EVKDAFRRLAIKYHPDKHAQSPEHVRHNATVRFKLVSEA 56
Query: 225 YEAI 228
YE +
Sbjct: 57 YEVL 60
>AT5G25530.1 | chr5:8889665-8890954 REVERSE LENGTH=348
Length = 347
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 40/56 (71%), Gaps = 4/56 (7%)
Query: 172 HYSILGLDRSRLEPFSDAEIKNAFRRKAMEYHPDQNQHNKEFAEAKFKEVMDSYEA 227
+Y IL ++R+ E ++K ++R+ AM++HPD+N + K AEAKFK++ ++YEA
Sbjct: 5 YYDILKVNRNATE----DDLKKSYRKLAMKWHPDKNPNTKTEAEAKFKQISEAYEA 56
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.130 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,420,314
Number of extensions: 217221
Number of successful extensions: 777
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 802
Number of HSP's successfully gapped: 11
Length of query: 237
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 141
Effective length of database: 8,474,633
Effective search space: 1194923253
Effective search space used: 1194923253
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)