Os07g0102300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0102300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.43 | 0.19 | 10.7 | 0.0518 | 0.722 | 0.588 | 0.108 | 0.644 | 0.132 | 5.95 | 20.81 | 1584 | -- | -- |
| 16.74 | 0.191 | 10.8 | -0.114 | 0.686 | 0.608 | 0.109 | -- | 0.0952 | 6.16 | 21.36 | 1390 | -- | -- |
| 16.45 | 0.189 | 10.7 | 0.0506 | 0.723 | 0.586 | -- | 0.634 | 0.131 | 5.94 | 20.9 | 1582 | -- | -- |
| 16.7 | 0.19 | 10.8 | -0.129 | 0.697 | 0.595 | -- | -- | 0.088 | 6.03 | 22.07 | 1454 | -- | -- |
| 41.14 | 0.299 | 10.7 | 0.103 | -- | 0.62 | -- | 0.856 | 0.162 | -- | 20.74 | 2783 | -- | -- |
| 29.49 | 0.255 | 10.7 | 0.0877 | 0.723 | -- | 0.131 | -- | 0.225 | 5.87 | -- | -- | -- | -- |
| 29.53 | 0.254 | 10.7 | 0.0886 | 0.723 | -- | -- | -- | 0.225 | 5.85 | -- | -- | -- | -- |
| 40.65 | 0.297 | 10.8 | -0.12 | -- | 0.656 | -- | -- | 0.111 | -- | 23.25 | 1333 | -- | -- |
| 17.07 | 0.192 | 10.8 | -- | 0.695 | 0.555 | -- | -- | 0.113 | 6.04 | 22.58 | 1445 | -- | -- |
| 56.65 | 0.352 | 10.7 | 0.111 | -- | -- | -- | -- | 0.242 | -- | -- | -- | -- | -- |
| 29.74 | 0.255 | 10.7 | -- | 0.725 | -- | -- | -- | 0.215 | 5.85 | -- | -- | -- | -- |
| 40.99 | 0.298 | 10.8 | -- | -- | 0.63 | -- | -- | 0.131 | -- | 23.35 | 1330 | -- | -- |
| 56.98 | 0.352 | 10.7 | -- | -- | -- | -- | -- | 0.229 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.46 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 22 |
| 4 | 16.48 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 22 |
| 14 | 16.50 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 23 |
| 15 | 16.51 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 22 | 16.51 | temperature | 20 | 1440 | > th | dose dependent | rect. | 9 | 22 |
| 31 | 16.51 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 41 | 16.52 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 85 | 16.56 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 19 |
| 101 | 16.58 | temperature | 20 | 1440 | > th | dose dependent | rect. | 10 | 16 |
| 129 | 16.59 | temperature | 10 | 1440 | > th | dose dependent | rect. | 8 | 18 |
| 145 | 16.60 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 16 |
| 166 | 16.61 | temperature | 20 | 1440 | > th | dose dependent | sin | 17 | NA |
| 187 | 16.62 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 7 |
| 188 | 16.62 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 14 |
| 237 | 16.64 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 13 |
| 274 | 16.66 | temperature | 10 | 1440 | > th | dose dependent | sin | 18 | NA |
| 275 | 16.66 | temperature | 20 | 1440 | > th | dose dependent | sin | 5 | NA |
| 315 | 16.68 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 329 | 16.68 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 331 | 16.69 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 333 | 16.69 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 334 | 16.69 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 386 | 16.70 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 404 | 16.71 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 406 | 16.71 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 412 | 16.72 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 6 |
| 500 | 16.76 | temperature | 10 | 1440 | > th | dose dependent | sin | 1 | NA |
| 600 | 16.80 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 603 | 16.80 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 8 |
| 673 | 16.84 | temperature | 15 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 678 | 16.84 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 10 |
| 855 | 16.92 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 1 |