BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0102300 Os07g0102300|AK101907
         (441 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0102300  Conserved hypothetical protein                      805   0.0  
Os10g0534100  Conserved hypothetical protein                      288   4e-78

>Os07g0102300 Conserved hypothetical protein
          Length = 441

 Score =  805 bits (2079), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/441 (91%), Positives = 405/441 (91%)

Query: 1   MGMAPAGRLLLISCLLCVPNSFGFAFAVEEEEDGSGLMPQLSPTGSXXXXXXXXXXXXXX 60
           MGMAPAGRLLLISCLLCVPNSFGFAFAVEEEEDGSGLMPQLSPTGS              
Sbjct: 1   MGMAPAGRLLLISCLLCVPNSFGFAFAVEEEEDGSGLMPQLSPTGSPNPLVPFLAPAPLA 60

Query: 61  XXXXXXXXXLSGKCSLNFTAVGDLITTTAVDCFASFAPFLANVICCPQLQAMLTILIGQS 120
                    LSGKCSLNFTAVGDLITTTAVDCFASFAPFLANVICCPQLQAMLTILIGQS
Sbjct: 61  PFFNTTPPNLSGKCSLNFTAVGDLITTTAVDCFASFAPFLANVICCPQLQAMLTILIGQS 120

Query: 121 SKQTGSLALDPTVATYCLSDVQQLLLSQGASDELHNICSLHLSNVTEGSCPVSTVDAFEA 180
           SKQTGSLALDPTVATYCLSDVQQLLLSQGASDELHNICSLHLSNVTEGSCPVSTVDAFEA
Sbjct: 121 SKQTGSLALDPTVATYCLSDVQQLLLSQGASDELHNICSLHLSNVTEGSCPVSTVDAFEA 180

Query: 181 VIDSSKLLEACHKIDPVNECCSRTCQNAINDASQKISFKDGGLTSYAGSPKVDSCRNVVL 240
           VIDSSKLLEACHKIDPVNECCSRTCQNAINDASQKISFKDGGLTSYAGSPKVDSCRNVVL
Sbjct: 181 VIDSSKLLEACHKIDPVNECCSRTCQNAINDASQKISFKDGGLTSYAGSPKVDSCRNVVL 240

Query: 241 RWLSSRLGPSSAKQMLRQISNCNVNGVCPLSFPDTSKVAKECSGTVKNGTSCCKAMDSYV 300
           RWLSSRLGPSSAKQMLRQISNCNVNGVCPLSFPDTSKVAKECSGTVKNGTSCCKAMDSYV
Sbjct: 241 RWLSSRLGPSSAKQMLRQISNCNVNGVCPLSFPDTSKVAKECSGTVKNGTSCCKAMDSYV 300

Query: 301 SHLQKQSFITNLQALDCAQFLGDKLQKMNVSMNVYSSCQITLKDFSLQVGSQESGCLLPS 360
           SHLQKQSFITNLQALDCAQFLGDKLQKMNVSMNVYSSCQITLKDFSLQVGSQESGCLLPS
Sbjct: 301 SHLQKQSFITNLQALDCAQFLGDKLQKMNVSMNVYSSCQITLKDFSLQVGSQESGCLLPS 360

Query: 361 MPSDASFDPATGISFTCDLNDNIAAPWPXXXXXXXXXXXXXVNIPERPAATSAQNGVNQN 420
           MPSDASFDPATGISFTCDLNDNIAAPWP             VNIPERPAATSAQNGVNQN
Sbjct: 361 MPSDASFDPATGISFTCDLNDNIAAPWPSSMQASSSSCNKSVNIPERPAATSAQNGVNQN 420

Query: 421 RLELSLLIYLGTLVVAIWLQV 441
           RLELSLLIYLGTLVVAIWLQV
Sbjct: 421 RLELSLLIYLGTLVVAIWLQV 441



>Os10g0534100 Conserved hypothetical protein
          Length = 473

 Score =  288 bits (738), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 158/378 (41%), Positives = 216/378 (57%), Gaps = 13/378 (3%)

Query: 70  LSGKCSLNFTAVGDLITTTAVDCFASFAPFLANVICCPQLQAMLTILIGQSSKQTGSLAL 129
           L+GKC +NF+A+  ++  TA DC    AP +A+VICCPQ+ +++ I          +L L
Sbjct: 97  LTGKCHVNFSALSYMMDKTASDCSIPLAPLVADVICCPQVNSLMNIFQATYGAGNNTLVL 156

Query: 130 DPTVATYCLSDVQQLLLSQGASDELHNICSLHLSNVTEGSCPVSTVDAFEAVIDSSKLLE 189
           +   A  C SDV  +L S+GA+  +  +C+L  SN+T+ SCPV  +  FE +++ SKLL+
Sbjct: 157 NQASANACFSDVMSILASKGANTNIPELCTLRPSNLTDASCPVKDISTFEKIVNVSKLLD 216

Query: 190 ACHKIDPVNECCSRTCQNAINDASQKISFKDGGLTSY---------AGSPKVDSCRNVVL 240
           AC  +DP+ ECC   CQ AI +A+  IS   GG   +         AG   V  C+ VV 
Sbjct: 217 ACSDVDPLKECCRPVCQPAIVEAAVHIS--SGGANMFGSSSISGSDAGINVVSDCKGVVH 274

Query: 241 RWLSSRLGPSSAKQMLRQISNCNVNGVCPLSFPDTSKVAKECSGTVKNGTSCCKAMDSYV 300
            WLS +L    +    R +S C VN VCPL F D S V K C     +  SCC A+ SY+
Sbjct: 275 SWLSMKLSSEESNTAFRVLSGCKVNKVCPLEFDDPSSVVKACGKASSSTPSCCGALHSYI 334

Query: 301 SHLQKQSFITNLQALDCAQFLGDKLQKMNVSMNVYSSCQITLKDFSLQVGSQESGCLLPS 360
           +  QKQ F+TNLQA++CA   G  LQK  VS ++Y  C I LKDFSLQ   Q+ GCLL S
Sbjct: 335 ATRQKQIFVTNLQAINCATMFGSMLQKAGVSNDIYELCDIDLKDFSLQAFGQQ-GCLLRS 393

Query: 361 MPSDASFDPATGISFTCDLNDNIAAPWPXXXXXXXXXX-XXXVNIPERPAATSAQNGVNQ 419
           +P+D  FD ATGISFTCDL+DNIAAPWP              +++P  P A ++ + V  
Sbjct: 394 LPTDIVFDNATGISFTCDLSDNIAAPWPSSSSVQSLSLCAPEMSLPALPVAPTSGSSVGI 453

Query: 420 NRLELSLLIYLGTLVVAI 437
           +R  + +L  L     AI
Sbjct: 454 SRTGIGILAPLLFFATAI 471



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.131    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,217,946
Number of extensions: 485090
Number of successful extensions: 987
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 984
Number of HSP's successfully gapped: 2
Length of query: 441
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 337
Effective length of database: 11,605,545
Effective search space: 3911068665
Effective search space used: 3911068665
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)