Os06g0724100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, FYVE/PHD-type domain containing protein.
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Os06g0724100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, FYVE/PHD-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 8.93 | 0.14 | 12.1 | 0.156 | 0.222 | 0.418 | -0.347 | 0.0786 | 0.0137 | 5.03 | 8.123 | 431 | -- | -- |
| 8.94 | 0.139 | 12.1 | 0.144 | 0.221 | 0.419 | -0.364 | -- | 0.0103 | 5.04 | 6.87 | 431 | -- | -- |
| 9.17 | 0.141 | 12.1 | 0.192 | 0.237 | 0.435 | -- | 0.326 | 0.0235 | 4.53 | 7.76 | 334 | -- | -- |
| 9.24 | 0.142 | 12.1 | 0.14 | 0.241 | 0.448 | -- | -- | 0.01 | 4.2 | 8.453 | 259 | -- | -- |
| 10.1 | 0.148 | 12.1 | 0.125 | -- | 0.309 | -- | 0.0223 | 0.0142 | -- | -1.912 | 2586 | -- | -- |
| 10.93 | 0.155 | 12.1 | 0.235 | 0.115 | -- | -0.424 | -- | 0.0716 | 4.74 | -- | -- | -- | -- |
| 11.35 | 0.158 | 12.1 | 0.237 | 0.114 | -- | -- | -- | 0.0737 | 3.72 | -- | -- | -- | -- |
| 10.1 | 0.148 | 12.1 | 0.119 | -- | 0.309 | -- | -- | 0.0128 | -- | -2.106 | 2590 | -- | -- |
| 9.7 | 0.145 | 12.1 | -- | 0.264 | 0.517 | -- | -- | -0.0138 | 4.18 | 9.085 | 249 | -- | -- |
| 12.07 | 0.162 | 12.1 | 0.241 | -- | -- | -- | -- | 0.0767 | -- | -- | -- | -- | -- |
| 12.82 | 0.168 | 12.1 | -- | 0.119 | -- | -- | -- | 0.0473 | 3.71 | -- | -- | -- | -- |
| 10.41 | 0.15 | 12.1 | -- | -- | 0.358 | -- | -- | -0.00859 | -- | 2.709 | 2610 | -- | -- |
| 13.6 | 0.172 | 12.1 | -- | -- | -- | -- | -- | 0.0499 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 8.76 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 3 | 8.78 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 7 | 8.85 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 12 | 8.93 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 3 |
| 13 | 8.93 | temperature | 10 | 270 | > th | dose dependent | sin | 19 | NA |
| 21 | 8.95 | temperature | 10 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 23 | 8.96 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 31 | 8.98 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 42 | 8.99 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 22 |
| 49 | 9.00 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 10 |
| 54 | 9.01 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 56 | 9.01 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 10 |
| 64 | 9.02 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 3 |
| 66 | 9.02 | temperature | 15 | 10 | > th | dose dependent | sin | 16 | NA |
| 83 | 9.02 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 20 |
| 140 | 9.04 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 7 |
| 164 | 9.05 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 272 | 9.08 | temperature | 10 | 1440 | > th | dose dependent | sin | 7 | NA |
| 293 | 9.08 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 23 |
| 306 | 9.09 | temperature | 30 | 1440 | < th | dose dependent | sin | 8 | NA |
| 348 | 9.09 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 23 |
| 350 | 9.09 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 356 | 9.10 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 22 |
| 400 | 9.11 | temperature | 10 | 720 | > th | dose dependent | sin | 0 | NA |
| 408 | 9.11 | temperature | 15 | 270 | > th | dose dependent | rect. | 11 | 12 |
| 458 | 9.12 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 460 | 9.12 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 509 | 9.13 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 561 | 9.13 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 562 | 9.13 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 572 | 9.14 | temperature | 30 | 270 | < th | dose dependent | sin | 19 | NA |
| 575 | 9.14 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 629 | 9.14 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 23 |
| 652 | 9.15 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 6 |
| 711 | 9.16 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 718 | 9.16 | temperature | 10 | 1440 | > th | dose dependent | rect. | 22 | 4 |
| 786 | 9.16 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 23 |
| 973 | 9.18 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 993 | 9.19 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 996 | 9.19 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |