BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0724100 Os06g0724100|AK060793
(525 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G20110.1 | chr1:6971554-6974578 FORWARD LENGTH=602 458 e-129
AT3G14270.1 | chr3:4754624-4761185 FORWARD LENGTH=1792 77 2e-14
AT4G33240.1 | chr4:16029504-16037278 REVERSE LENGTH=1758 74 3e-13
AT1G61690.1 | chr1:22782825-22786782 REVERSE LENGTH=1172 68 1e-11
AT3G43230.1 | chr3:15207776-15209599 FORWARD LENGTH=486 62 7e-10
AT1G29800.1 | chr1:10432736-10435177 FORWARD LENGTH=511 60 3e-09
AT3G47660.1 | chr3:17571192-17574805 FORWARD LENGTH=955 52 9e-07
AT5G42140.1 | chr5:16837547-16841640 REVERSE LENGTH=1074 51 2e-06
AT5G12350.1 | chr5:3995789-4000545 FORWARD LENGTH=1076 50 2e-06
AT5G19420.2 | chr5:6547945-6552981 REVERSE LENGTH=1140 49 5e-06
AT1G69710.1 | chr1:26222325-26226530 FORWARD LENGTH=1042 49 5e-06
>AT1G20110.1 | chr1:6971554-6974578 FORWARD LENGTH=602
Length = 601
Score = 458 bits (1178), Expect = e-129, Method: Compositional matrix adjust.
Identities = 236/379 (62%), Positives = 276/379 (72%), Gaps = 30/379 (7%)
Query: 155 DGVYAYSGGGGDAPEPYGARGTAPRS-NSPLFDDYGRSIGSTKERXXXXXXXXXSSASPK 213
DGVYAY GG EPYG+RGTAP+S NS LFDDYGRSI + SS S K
Sbjct: 243 DGVYAYQGG---KVEPYGSRGTAPKSSNSTLFDDYGRSISFSSSGRDSSV----SSNSAK 295
Query: 214 VVRAVPKVETSEDTSGGVQKFRVKLLPEGAG-SPMDVLCQVGLDGIRMLDPNTSRTLRIY 272
+VRAVPK + ED++GGVQKFRVKLL E G + DVLCQ+GLDG+RMLDP+TSRTLRIY
Sbjct: 296 IVRAVPKADVQEDSTGGVQKFRVKLLAETYGQTTTDVLCQIGLDGLRMLDPSTSRTLRIY 355
Query: 273 PLETVTRWDVLDSSIFAFWSKSSVDFEARRIRLKSNSYTTNTILDTVTAASVQFKEMGGX 332
PLE +TR + LDSSI AFWSK+ VD EA+RIRL+SNSYTTNT+LDTVTAA Q KE+GG
Sbjct: 356 PLENITRCEKLDSSILAFWSKTPVDIEAKRIRLQSNSYTTNTLLDTVTAAMFQAKEIGGS 415
Query: 333 XXXXXXXXXXXXKPP------EQQNDRRKNFLDWRNLMKPMNEEKDHWVPDEAVTKCTAC 386
+PP EQ +++K DW N++KP+NEEKDHWVPDEAV+KCT+C
Sbjct: 416 S-----------RPPTSGKLIEQTAEKKKGLGDWMNIIKPVNEEKDHWVPDEAVSKCTSC 464
Query: 387 TADFSAFNRRHHCRNCGDIFCDKCTQGRTPLTTDADAQPVRVCDRCMAEVSQRLNNAREA 446
+DF AF RRHHCRNCGD+FCDKCTQGR LT + +A VRVCDRCMAEVSQRL+NA+E
Sbjct: 465 GSDFGAFIRRHHCRNCGDVFCDKCTQGRIALTAEDNAPQVRVCDRCMAEVSQRLSNAKET 524
Query: 447 ANRPI-VHSHEDLAKKLKDAMDINKKXXXXXXXXXXXXXXXXXEVACPTCTVHLQVQVPT 505
R + + SHEDLA+KL++ M+ N+K EVACPTCTVHLQVQVP
Sbjct: 525 TGRNVSLQSHEDLARKLQEEMERNRK---SSSGLREGSGRRMKEVACPTCTVHLQVQVPV 581
Query: 506 SGSETIECGVCQQPFLVSA 524
SGSETIECGVCQ PFLVSA
Sbjct: 582 SGSETIECGVCQNPFLVSA 600
>AT3G14270.1 | chr3:4754624-4761185 FORWARD LENGTH=1792
Length = 1791
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 13/107 (12%)
Query: 355 KNFLDWRNLMKPMNEEKDHWVPDEAVTKCTACTADFSAFNRRHHCRNCGDIFCDKCTQGR 414
K++L WR+ +P +D W+PD++ C C F+ NRRHHCR+CG +FC KCT
Sbjct: 19 KSWLPWRS--EPATVSRDFWMPDQSCRVCYECDCQFTLINRRHHCRHCGRVFCGKCTANS 76
Query: 415 TPL------TTDADAQPVRVCDRCMAEVSQ-----RLNNAREAANRP 450
P T D + +RVC+ C + Q ++N E + P
Sbjct: 77 IPFAPSDLRTPREDWERIRVCNYCFRQWEQGDGGPHVSNITELSTSP 123
>AT4G33240.1 | chr4:16029504-16037278 REVERSE LENGTH=1758
Length = 1757
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 368 NEEKDHWVPDEAVTKCTACTADFSAFNRRHHCRNCGDIFCDKCTQGRTPL----TTDADA 423
N +D W+PD++ C C A F+ FNRRHHCR CG +FC KC P T D+
Sbjct: 27 NMSRDFWMPDQSCPVCYECDAQFTVFNRRHHCRLCGRVFCAKCAANSIPSPSDETKDSHE 86
Query: 424 QP--VRVCDRCMAEVSQ 438
+P +RVC+ C + Q
Sbjct: 87 EPERIRVCNYCYKQWEQ 103
>AT1G61690.1 | chr1:22782825-22786782 REVERSE LENGTH=1172
Length = 1171
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Query: 372 DHWVPDEAVTKCTACTADFSAFNRRHHCRNCGDIFCDKCTQGRTPLTTDADAQPVRVCDR 431
+ WV D + C C++ F+ NR+HHCR CG +FC CTQ R L D+ PVR+C+
Sbjct: 16 NSWVVD--ASHCQGCSSQFTFINRKHHCRRCGGLFCGTCTQQRLSLRGQGDS-PVRICEP 72
Query: 432 CMAEVSQRLNNAREAANRPIVHSHEDLAKK 461
C EAA + H +++ A K
Sbjct: 73 C--------KKIEEAARFELRHGYKNRAAK 94
>AT3G43230.1 | chr3:15207776-15209599 FORWARD LENGTH=486
Length = 485
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 12/106 (11%)
Query: 356 NFLDWRNLMKPMNEEKDHWVPDEAVTKCTACTADFSAFN-RRHHCRNCGDIFCDKCTQGR 414
N+ ++ L++ E W+PD + C C+ F+A RHHCR CG IFC C++GR
Sbjct: 157 NYSVYKELLE---AEPPEWLPDSLASTCMQCSTPFTAITCGRHHCRFCGGIFCRNCSKGR 213
Query: 415 TPLTTDA-DAQPVRVCDRCMAEVS-------QRLNNAREAANRPIV 452
+ + + P RVCD C + ++NA + A +V
Sbjct: 214 CLMPSRFRERNPQRVCDSCYERLDPLQCVLINSISNAVQVAKHDVV 259
>AT1G29800.1 | chr1:10432736-10435177 FORWARD LENGTH=511
Length = 510
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 10/110 (9%)
Query: 356 NFLDWRNLMKPMNEEKDHWVPDEAVTKCTACTADFSAFN-RRHHCRNCGDIFCDKCTQGR 414
NF + R +++ E W+PD A + C C+ F RHHCR CG IFC C++G+
Sbjct: 167 NFGNAREILE---TEPPKWLPDSAASACMLCSVRFHPIMCSRHHCRYCGGIFCRDCSKGK 223
Query: 415 TPLTTDAD-AQPVRVCDRCMAEVSQ----RLNNAREAANRPIVHSHEDLA 459
+ + + P RVCD C + ++ AA P H DL+
Sbjct: 224 SLVPVKFRVSDPQRVCDVCFVRLESVQPYLMDQVSPAAQLP-THDLTDLS 272
>AT3G47660.1 | chr3:17571192-17574805 FORWARD LENGTH=955
Length = 954
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 381 TKCTACTADFSAFNRRHHCRNCGDIFCDKCTQGRTPLTTDA--DAQPVRVCDRCMAEVSQ 438
TKC+ C F+ + H+C NCG +FC+ CT ++ A +P RVCD C
Sbjct: 643 TKCSGCRHPFNYMRKLHNCYNCGSVFCNSCTSKKSLAAAMAPKTNRPYRVCDDCYI---- 698
Query: 439 RLNNAREAANRP 450
+L RE+ P
Sbjct: 699 KLEGIRESLATP 710
>AT5G42140.1 | chr5:16837547-16841640 REVERSE LENGTH=1074
Length = 1073
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 374 WVPDEAVTKCTACTADFSAFNRRHHCRNCGDIFCDKCTQGRTPLTTDA--DAQPVRVCDR 431
WV ++C+AC F +RH+C NCG + C C+ ++ A +P RVCD
Sbjct: 618 WVSGTEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSKKSLKAALAPNPGKPYRVCDS 677
Query: 432 CMAEVSQ 438
C +++S+
Sbjct: 678 CHSKLSK 684
>AT5G12350.1 | chr5:3995789-4000545 FORWARD LENGTH=1076
Length = 1075
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 374 WVPDEAVTKCTACTADFSAFNRRHHCRNCGDIFCDKCTQGRTPLTTDA--DAQPVRVCDR 431
W + C+ C FS +RH+C NCG +FC CT ++ A +P RVCD+
Sbjct: 653 WASGMDQSMCSGCRQPFSFKRKRHNCYNCGLVFCHSCTSKKSLKACMAPNPNKPYRVCDK 712
Query: 432 CMAEVSQRL 440
C ++ + +
Sbjct: 713 CFNKLKKTM 721
>AT5G19420.2 | chr5:6547945-6552981 REVERSE LENGTH=1140
Length = 1139
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 374 WVPDEAVTKCTACTADFSAFNRRHHCRNCGDIFCDKCTQGRTPLTTDA--DAQPVRVCDR 431
W + C+ C F+ +RH+C NCG +FC C+ ++ A +P RVCDR
Sbjct: 691 WASGMDQSMCSGCRQPFNFKRKRHNCYNCGLVFCHSCSNKKSLKACMAPNPNKPYRVCDR 750
Query: 432 CMAEVSQRL 440
C ++ + +
Sbjct: 751 CFNKLKKAM 759
>AT1G69710.1 | chr1:26222325-26226530 FORWARD LENGTH=1042
Length = 1041
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 374 WVPDEAVTKCTACTADFSAFNRRHHCRNCGDIFCDKCTQG---RTPLTTDADAQPVRVCD 430
WVP + C C F+ +RH+C NCG +FC C+ R L D + +P RVC
Sbjct: 648 WVPGSEHSLCAGCRNPFNFRRKRHNCYNCGLVFCKVCSSRKSLRAALAPDMN-KPYRVCY 706
Query: 431 RCMAEVSQRLNNAREAA 447
C +L +RE++
Sbjct: 707 GCFT----KLKKSRESS 719
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.132 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,971,092
Number of extensions: 367802
Number of successful extensions: 1229
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 1217
Number of HSP's successfully gapped: 11
Length of query: 525
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 422
Effective length of database: 8,282,721
Effective search space: 3495308262
Effective search space used: 3495308262
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 114 (48.5 bits)