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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0711800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Pectinesterase inhibitor domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.06 (0.0637) R2 : 0.357
β1 : -3.49 (0.272) R2dD : 0.365 R2D : 0.0722
β2 : 1.42 (0.156) R2dC : 0.14 R2C : 0.0614
β3 : 1.29 (0.192) R2dE : 0.0844 R2E : -0.0476
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -5 (0.767) R2dD*E : 0.0931 R2D*E : -0.0669
γ1 : -0.349 (0.14) R2dN8 : 0.0138 R2N8 : -0.0412
σ : 1.13
deviance : 585.58
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_____
C
peak time of C : 0.564
E
wheather : temperature
threshold : 20.58
memory length : 793
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 3.28
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
585.1 1.14 6.06 -3.52 1.42 1.29 -0.347 -5.09 -0.354 0.572 20.6 793 3.32 --
626.81 1.17 5.95 -2.65 1.72 1.73 0.358 -- -0.155 0.912 19.43 957 3.35 --
585.58 1.13 6.06 -3.49 1.42 1.29 -- -5 -0.349 0.564 20.58 793 3.28 --
626.89 1.17 5.95 -2.7 1.84 1.74 -- -- -0.134 1.02 19.5 918 2.43 --
654.47 1.19 6.07 -3.12 -- 1.61 -- -3.6 -0.295 -- 20.8 870 8.37 --
687.9 1.23 5.86 -2.15 1.25 -- -0.581 -- 0.171 2.46 -- -- -- --
689.02 1.23 5.86 -2.14 1.25 -- -- -- 0.175 2.34 -- -- -- --
652.27 1.19 5.98 -2.68 -- 2.06 -- -- -0.173 -- 19.41 901 10.2 --
795.03 1.31 5.86 -- 1.63 1.08 -- -- 0.284 0.602 19.4 646 1.43 --
780.93 1.31 5.85 -2.08 -- -- -- -- 0.205 -- -- -- -- --
809.39 1.33 5.8 -- 1.2 -- -- -- 0.413 2.3 -- -- -- --
816.89 1.33 5.83 -- -- 1.55 -- -- 0.423 -- 17.1 769 10.4 --
895.54 1.4 5.8 -- -- -- -- -- 0.437 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 579.72 humidity 90 14400 < th dose independent rect. 22 5
5 582.20 wind 1 43200 > th dose independent rect. 2 1
7 582.61 humidity 90 14400 > th dose independent rect. 22 5
11 583.22 wind 1 43200 < th dose independent rect. 2 1
21 585.63 temperature 20 1440 < th dose independent rect. 5 1
29 586.69 wind 1 43200 < th dose dependent rect. 2 1
37 587.39 temperature 10 43200 < th dose dependent rect. 22 7
52 587.52 temperature 10 43200 < th dose dependent rect. 2 22
59 588.21 temperature 20 720 > th dose independent rect. 24 8
64 588.48 temperature 20 720 > th dose independent rect. 22 11
72 588.90 humidity 90 14400 > th dose independent rect. 1 1
94 589.44 humidity 80 14400 > th dose dependent rect. 24 1
98 589.58 temperature 10 43200 < th dose dependent rect. 2 3
100 589.66 temperature 10 43200 < th dose independent rect. 3 1
111 589.91 temperature 10 43200 < th dose independent rect. 2 3
128 590.38 temperature 10 43200 > th dose independent rect. 3 2
192 591.00 temperature 10 43200 < th dose dependent sin 10 NA
231 591.53 temperature 10 43200 < th dose independent rect. 22 7
292 591.77 temperature 10 43200 < th dose dependent no NA NA
384 592.34 temperature 10 43200 > th dose independent rect. 22 7
387 592.39 temperature 20 720 > th dose independent sin 9 NA
441 593.05 temperature 20 1440 > th dose independent rect. 5 1
445 593.22 radiation 10 4320 < th dose dependent rect. 24 5
464 593.40 temperature 10 43200 > th dose independent rect. 18 11
465 593.41 temperature 10 43200 > th dose independent rect. 16 13
467 593.47 humidity 90 14400 > th dose independent sin 11 NA
469 593.48 temperature 10 43200 > th dose independent rect. 14 15
475 593.57 humidity 80 14400 > th dose dependent rect. 22 5
499 593.92 temperature 10 43200 < th dose independent rect. 2 21
527 594.01 temperature 20 720 > th dose independent rect. 3 3
558 594.44 temperature 10 43200 > th dose independent rect. 2 17
576 594.78 temperature 10 43200 > th dose independent rect. 2 21
586 594.95 temperature 10 43200 > th dose independent rect. 2 13
592 595.00 temperature 10 43200 > th dose independent rect. 2 15
599 595.09 humidity 90 14400 < th dose independent sin 11 NA
665 595.43 temperature 10 43200 < th dose independent sin 10 NA
725 596.07 temperature 10 43200 > th dose independent sin 10 NA
911 596.97 temperature 10 43200 < th dose independent no NA NA
948 596.99 temperature 10 43200 > th dose independent rect. 22 21
998 597.45 temperature 10 43200 > th dose independent rect. 22 17