Os06g0705100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Thylakoid lumenal 13.3 kDa protein (P16.5) (Fragment).
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Os06g0705100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Thylakoid lumenal 13.3 kDa protein (P16.5) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 111.01 | 0.495 | 13.1 | -2.48 | 0.51 | -0.496 | 0.573 | -2.28 | -1.09 | 21.2 | 29.5 | 1520 | -- | -- |
| 118.03 | 0.506 | 13.2 | -2.74 | 0.405 | -0.505 | 0.545 | -- | -1.17 | 20.1 | 28.9 | 2897 | -- | -- |
| 112.17 | 0.493 | 13.1 | -2.48 | 0.506 | -0.493 | -- | -2.3 | -1.08 | 21.2 | 29.5 | 1507 | -- | -- |
| 114.37 | 0.498 | 13.2 | -3.07 | 0.47 | -0.708 | -- | -- | -1.22 | 21.1 | 29.28 | 2970 | -- | -- |
| 121.74 | 0.514 | 13.1 | -2.74 | -- | -0.838 | -- | -1.33 | -1.19 | -- | 28.9 | 2222 | -- | -- |
| 137.07 | 0.549 | 13.2 | -2.82 | 0.527 | -- | 0.6 | -- | -1.17 | 21.5 | -- | -- | -- | -- |
| 138.4 | 0.551 | 13.2 | -2.84 | 0.524 | -- | -- | -- | -1.17 | 21.5 | -- | -- | -- | -- |
| 121.65 | 0.514 | 13.2 | -3.11 | -- | -0.957 | -- | -- | -1.34 | -- | 28.3 | 2228 | -- | -- |
| 349.13 | 0.87 | 13.1 | -- | 0.511 | -0.219 | -- | -- | -0.851 | 21 | 29.4 | 3089 | -- | -- |
| 154.55 | 0.581 | 13.2 | -2.84 | -- | -- | -- | -- | -1.18 | -- | -- | -- | -- | -- |
| 351.09 | 0.876 | 13.1 | -- | 0.523 | -- | -- | -- | -0.858 | 21.1 | -- | -- | -- | -- |
| 359.03 | 0.883 | 13.1 | -- | -- | -0.452 | -- | -- | -0.911 | -- | 27.44 | 764 | -- | -- |
| 366.86 | 0.894 | 13.1 | -- | -- | -- | -- | -- | -0.861 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 97.07 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 9 | 99.25 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 10 | 99.35 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 11 | 99.35 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 43 | 103.35 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 6 | 12 |
| 59 | 104.13 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 9 |
| 62 | 104.28 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 8 |
| 64 | 104.29 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 4 |
| 67 | 104.40 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 72 | 104.46 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 9 |
| 80 | 104.56 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 82 | 104.56 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 83 | 104.57 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 89 | 104.68 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 94 | 104.78 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 101 | 104.91 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 116 | 105.21 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 127 | 105.34 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 143 | 105.45 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 193 | 105.72 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 4 |
| 267 | 105.95 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 282 | 106.02 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 294 | 106.06 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 303 | 106.09 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 311 | 106.11 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 14 |
| 327 | 106.16 | atmosphere | 1000.0 | 43200 | < th | dose independent | sin | 1 | NA |
| 340 | 106.18 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 14 |
| 356 | 106.22 | atmosphere | 1000.0 | 43200 | > th | dose independent | sin | 2 | NA |
| 402 | 106.34 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 429 | 106.39 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 10 | 3 |
| 455 | 106.45 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 10 | 5 |
| 465 | 106.46 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 476 | 106.47 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 17 | 14 |
| 536 | 106.57 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 18 | 4 |
| 633 | 106.70 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 20 | NA |
| 668 | 106.75 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 723 | 106.81 | atmosphere | 1000.0 | 43200 | < th | dose dependent | sin | 23 | NA |
| 753 | 106.84 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 18 | 21 |
| 754 | 106.84 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 785 | 106.88 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 802 | 106.89 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 847 | 106.94 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 19 | 22 |
| 853 | 106.95 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 19 | 20 |
| 862 | 106.96 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 16 | 23 |
| 882 | 106.98 | atmosphere | 1000.0 | 43200 | < th | dose independent | no | NA | NA |
| 936 | 107.02 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 9 | 23 |
| 969 | 107.05 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 16 | 23 |
| 982 | 107.07 | atmosphere | 1000.0 | 43200 | > th | dose independent | no | NA | NA |
| 984 | 107.07 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 990 | 107.07 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 2 |