BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0705100 Os06g0705100|AK119552
         (239 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G02530.1  | chr4:1112335-1114005 REVERSE LENGTH=217            176   1e-44

>AT4G02530.1 | chr4:1112335-1114005 REVERSE LENGTH=217
          Length = 216

 Score =  176 bits (445), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 87/144 (60%), Positives = 105/144 (72%)

Query: 96  AAVLEADDDIELLERVKEDRKKRLQKQGVISSSGTETGYLQDLIYKLSKVGQAIDKNDLP 155
           AA+LEADDD ELLE+VK+DRKKR+++Q V++S+  E GYLQDL+YKLSKVGQAI+ NDLP
Sbjct: 73  AAILEADDDEELLEKVKQDRKKRIERQAVLNSAVKEKGYLQDLVYKLSKVGQAIENNDLP 132

Query: 156 AASSVLGPNSDAQWVQNINVAFTKFSSSPEEKNMVDSFNSSLASLITXXXXXXXXXXXXA 215
           AA  VLG   D +WV+ +N+AFTK S+SPEE   V++FNSSLASLIT            A
Sbjct: 133 AAGLVLGKGIDTEWVKTVNLAFTKLSTSPEENTEVEAFNSSLASLITSVNKNDIESSKLA 192

Query: 216 FVSSATTLEKWIASAGLSGQLKGF 239
           FVSSA   EKW    GL  QLKG 
Sbjct: 193 FVSSAGAFEKWTTLTGLLEQLKGL 216



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.127    0.343 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,317,512
Number of extensions: 108949
Number of successful extensions: 271
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 271
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 143
Effective length of database: 8,474,633
Effective search space: 1211872519
Effective search space used: 1211872519
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 110 (47.0 bits)