BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0705100 Os06g0705100|AK119552
         (239 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0705100  Similar to Thylakoid lumenal 13.3 kDa protein ...   332   2e-91

>Os06g0705100 Similar to Thylakoid lumenal 13.3 kDa protein (P16.5) (Fragment)
          Length = 239

 Score =  332 bits (851), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 169/210 (80%), Positives = 169/210 (80%)

Query: 30  PVQLQQHSLSAARAKKPISFRXXXXXXXXXQCHQERRAVVVGRRSXXXXXXXXXXXXXXX 89
           PVQLQQHSLSAARAKKPISFR         QCHQERRAVVVGRRS               
Sbjct: 30  PVQLQQHSLSAARAKKPISFRAVAAAAVSSQCHQERRAVVVGRRSGMASCLLAAVAASLS 89

Query: 90  XXXXXRAAVLEADDDIELLERVKEDRKKRLQKQGVISSSGTETGYLQDLIYKLSKVGQAI 149
                RAAVLEADDDIELLERVKEDRKKRLQKQGVISSSGTETGYLQDLIYKLSKVGQAI
Sbjct: 90  GAGEARAAVLEADDDIELLERVKEDRKKRLQKQGVISSSGTETGYLQDLIYKLSKVGQAI 149

Query: 150 DKNDLPAASSVLGPNSDAQWVQNINVAFTKFSSSPEEKNMVDSFNSSLASLITXXXXXXX 209
           DKNDLPAASSVLGPNSDAQWVQNINVAFTKFSSSPEEKNMVDSFNSSLASLIT       
Sbjct: 150 DKNDLPAASSVLGPNSDAQWVQNINVAFTKFSSSPEEKNMVDSFNSSLASLITSVNKSDV 209

Query: 210 XXXXXAFVSSATTLEKWIASAGLSGQLKGF 239
                AFVSSATTLEKWIASAGLSGQLKGF
Sbjct: 210 DSSKSAFVSSATTLEKWIASAGLSGQLKGF 239



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.127    0.343 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,002,752
Number of extensions: 154327
Number of successful extensions: 285
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 284
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 141
Effective length of database: 11,918,829
Effective search space: 1680554889
Effective search space used: 1680554889
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 154 (63.9 bits)