Os06g0704300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, CCCH-type domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os06g0704300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Zinc finger, CCCH-type domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 109.98 | 0.493 | 5.86 | -0.589 | 0.354 | 0.486 | -0.367 | 0.0182 | -0.0922 | 10.4 | 20.44 | 10 | -- | -- |
| 109.91 | 0.488 | 5.86 | -0.589 | 0.356 | 0.485 | -0.364 | -- | -0.0929 | 10.4 | 20.51 | 25 | -- | -- |
| 110.43 | 0.489 | 5.87 | -0.616 | 0.356 | 0.482 | -- | -0.0584 | -0.0976 | 10.4 | 20.5 | 25 | -- | -- |
| 110.45 | 0.489 | 5.87 | -0.608 | 0.358 | 0.484 | -- | -- | -0.0985 | 10.4 | 20.55 | 25 | -- | -- |
| 117.86 | 0.506 | 5.88 | -0.629 | -- | 0.573 | -- | 0.00385 | -0.113 | -- | 20.6 | 23 | -- | -- |
| 120.01 | 0.514 | 5.84 | -0.465 | 0.449 | -- | -0.34 | -- | 0.000349 | 11 | -- | -- | -- | -- |
| 120.5 | 0.514 | 5.84 | -0.479 | 0.45 | -- | -- | -- | -0.00064 | 11.1 | -- | -- | -- | -- |
| 117.86 | 0.506 | 5.88 | -0.633 | -- | 0.575 | -- | -- | -0.113 | -- | 20.57 | 22 | -- | -- |
| 119.73 | 0.51 | 5.85 | -- | 0.379 | 0.393 | -- | -- | -0.0139 | 10.7 | 20.6 | 26 | -- | -- |
| 133.13 | 0.539 | 5.85 | -0.489 | -- | -- | -- | -- | -0.00425 | -- | -- | -- | -- | -- |
| 126.54 | 0.526 | 5.83 | -- | 0.455 | -- | -- | -- | 0.0527 | 11.1 | -- | -- | -- | -- |
| 128.09 | 0.527 | 5.85 | -- | -- | 0.484 | -- | -- | -0.0115 | -- | 20.5 | 21 | -- | -- |
| 139.45 | 0.551 | 5.84 | -- | -- | -- | -- | -- | 0.0501 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 105.04 | temperature | 20.0 | 10 | > th | dose independent | rect. | 8 | 22 |
| 4 | 106.10 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 5 | 106.12 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 7 | 106.32 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 10 |
| 8 | 106.36 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 16 |
| 12 | 106.80 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 2 |
| 13 | 106.83 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 14 | 106.93 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 16 | 106.93 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 17 | 106.96 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 12 | 20 |
| 19 | 107.06 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 29 | 107.41 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 8 | 21 |
| 32 | 107.51 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 17 | 15 |
| 35 | 107.54 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 36 | 107.57 | temperature | 20.0 | 10 | > th | dose independent | rect. | 23 | 13 |
| 56 | 107.91 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 21 | 7 |
| 73 | 108.22 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 75 | 108.26 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 89 | 108.44 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 98 | 108.57 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 9 | 2 |
| 110 | 108.64 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 111 | 108.64 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 140 | 108.85 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 172 | 108.99 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 23 | 10 |
| 242 | 109.16 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 295 | 109.29 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 305 | 109.35 | temperature | 20.0 | 10 | > th | dose independent | rect. | 16 | 20 |
| 317 | 109.36 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 22 | 12 |
| 319 | 109.37 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 23 | 10 |
| 328 | 109.43 | temperature | 20.0 | 10 | > th | dose independent | sin | 9 | NA |
| 334 | 109.45 | atmosphere | 995.0 | 43200 | > th | dose independent | sin | 22 | NA |
| 364 | 109.50 | temperature | 20.0 | 10 | > th | dose independent | rect. | 16 | 23 |
| 365 | 109.51 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 366 | 109.52 | atmosphere | 995.0 | 43200 | < th | dose independent | sin | 22 | NA |
| 369 | 109.53 | temperature | 20.0 | 10 | > th | dose independent | rect. | 23 | 23 |
| 373 | 109.56 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 401 | 109.62 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 412 | 109.65 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 427 | 109.73 | temperature | 20.0 | 10 | < th | dose independent | rect. | 20 | 13 |
| 431 | 109.75 | temperature | 20.0 | 90 | > th | dose independent | rect. | 23 | 6 |
| 432 | 109.75 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 438 | 109.79 | temperature | 20.0 | 10 | > th | dose independent | rect. | 13 | 23 |
| 441 | 109.81 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 9 |
| 444 | 109.83 | temperature | 20.0 | 10 | > th | dose independent | rect. | 16 | 13 |
| 471 | 109.92 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 478 | 109.94 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 484 | 109.96 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 499 | 109.98 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 512 | 110.01 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 15 |
| 517 | 110.02 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 20 | 9 |
| 520 | 110.03 | temperature | 20.0 | 10 | < th | dose independent | rect. | 12 | 21 |
| 522 | 110.04 | temperature | 20.0 | 10 | > th | dose independent | rect. | 23 | 7 |
| 541 | 110.08 | temperature | 20.0 | 10 | < th | dose independent | rect. | 16 | 17 |
| 546 | 110.10 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 557 | 110.11 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 19 |
| 565 | 110.13 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 567 | 110.14 | temperature | 20.0 | 10 | < th | dose independent | sin | 8 | NA |
| 577 | 110.15 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 21 | 7 |
| 590 | 110.18 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 594 | 110.18 | atmosphere | 995.0 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 606 | 110.21 | wind | 5.0 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 610 | 110.21 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 21 |
| 628 | 110.25 | wind | 5.0 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 640 | 110.26 | atmosphere | 1015.0 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 647 | 110.27 | atmosphere | 995.0 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 654 | 110.28 | atmosphere | 1010.0 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 662 | 110.29 | atmosphere | 995.0 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 674 | 110.30 | atmosphere | 995.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 675 | 110.30 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 13 |
| 691 | 110.32 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 723 | 110.34 | atmosphere | 995.0 | 43200 | > th | dose dependent | rect. | 7 | 7 |
| 727 | 110.34 | atmosphere | 995.0 | 43200 | > th | dose dependent | rect. | 4 | 10 |
| 752 | 110.35 | atmosphere | 1015.0 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 772 | 110.36 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 867 | 110.39 | atmosphere | 1015.0 | 43200 | < th | dose dependent | rect. | 4 | 11 |
| 888 | 110.40 | atmosphere | 1015.0 | 43200 | < th | dose dependent | rect. | 7 | 8 |
| 899 | 110.41 | atmosphere | 995.0 | 43200 | > th | dose dependent | sin | 3 | NA |
| 931 | 110.42 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 1 |