BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0704300 Os06g0704300|AK107008
         (390 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G75340.1  | chr1:28269153-28271873 REVERSE LENGTH=436          171   7e-43

>AT1G75340.1 | chr1:28269153-28271873 REVERSE LENGTH=436
          Length = 435

 Score =  171 bits (433), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 110/257 (42%), Positives = 135/257 (52%), Gaps = 43/257 (16%)

Query: 4   RQEICRNFQRGSCKYGAQCRYLHASPHXXXXXXXAKP-NPFGFGTXXXXXXXXXXXXXXX 62
           R+E+CRNFQRGSC+YG  CR+LH           AKP NPFGFGT               
Sbjct: 2   RKELCRNFQRGSCRYGENCRFLHP--------QQAKPNNPFGFGTQNQQQQQQQQQQNSS 53

Query: 63  XXXXXXXXXXXXXXXVQGANAQSRNAPGPAKPFQNKWVRDPSAPTKQTEAVQP----PQA 118
                            G   QS  +  P + FQN W R  S PT    A        Q 
Sbjct: 54  NPF--------------GFGVQSGGSSRPNQ-FQNTWSRTASTPTGGGAAASTQQTGKQT 98

Query: 119 QAAHTSCEDPQSCRQQISEDFKNEAPIWKLTCYAHLRNGPCNIKGDISFEELRAKAYEEG 178
           Q A   C DP +C++ + +DFKNE P+WKLTCY H +  PC++ GDIS+EELRA AYEE 
Sbjct: 99  QPADHKCTDPAACKRVMQDDFKNERPMWKLTCYGHWKYFPCDVTGDISYEELRAVAYEEA 158

Query: 179 KQGHSLQSIVEGERNLQNAKLMEFTNLL-----NSARPSQTP-SFPTMSSFPEVKNNSSF 232
           K+G  LQSIVE ERNLQN+K+ EF N L      S   +Q+P +  T S FP+       
Sbjct: 159 KRGIPLQSIVERERNLQNSKIAEFENFLRNPYKGSVTANQSPFAATTPSIFPQ------- 211

Query: 233 GASQTNGP-PVFSSFSQ 248
            +SQ N P P FS F+Q
Sbjct: 212 -SSQINSPSPAFSGFNQ 227



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.128    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,521,658
Number of extensions: 344541
Number of successful extensions: 871
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 868
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 290
Effective length of database: 8,364,969
Effective search space: 2425841010
Effective search space used: 2425841010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 113 (48.1 bits)