BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0704300 Os06g0704300|AK107008
         (390 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0704300  Zinc finger, CCCH-type domain containing protein    663   0.0  

>Os06g0704300 Zinc finger, CCCH-type domain containing protein
          Length = 390

 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/390 (85%), Positives = 334/390 (85%)

Query: 1   MSRRQEICRNFQRGSCKYGAQCRYLHASPHXXXXXXXAKPNPFGFGTXXXXXXXXXXXXX 60
           MSRRQEICRNFQRGSCKYGAQCRYLHASPH       AKPNPFGFGT             
Sbjct: 1   MSRRQEICRNFQRGSCKYGAQCRYLHASPHQQQQQQQAKPNPFGFGTGSRQQQQPSFGSQ 60

Query: 61  XXXXXXXXXXXXXXXXXVQGANAQSRNAPGPAKPFQNKWVRDPSAPTKQTEAVQPPQAQA 120
                            VQGANAQSRNAPGPAKPFQNKWVRDPSAPTKQTEAVQPPQAQA
Sbjct: 61  FQQQQQQQQKPNPFGFGVQGANAQSRNAPGPAKPFQNKWVRDPSAPTKQTEAVQPPQAQA 120

Query: 121 AHTSCEDPQSCRQQISEDFKNEAPIWKLTCYAHLRNGPCNIKGDISFEELRAKAYEEGKQ 180
           AHTSCEDPQSCRQQISEDFKNEAPIWKLTCYAHLRNGPCNIKGDISFEELRAKAYEEGKQ
Sbjct: 121 AHTSCEDPQSCRQQISEDFKNEAPIWKLTCYAHLRNGPCNIKGDISFEELRAKAYEEGKQ 180

Query: 181 GHSLQSIVEGERNLQNAKLMEFTNLLNSARPSQTPSFPTMSSFPEVKNNSSFGASQTNGP 240
           GHSLQSIVEGERNLQNAKLMEFTNLLNSARPSQTPSFPTMSSFPEVKNNSSFGASQTNGP
Sbjct: 181 GHSLQSIVEGERNLQNAKLMEFTNLLNSARPSQTPSFPTMSSFPEVKNNSSFGASQTNGP 240

Query: 241 PVFSSFSQIXXXXXXXXXXXXXXXXXXXSSPFGHPSSAPLAAPTFGSSQMKFGVSSVFGN 300
           PVFSSFSQI                   SSPFGHPSSAPLAAPTFGSSQMKFGVSSVFGN
Sbjct: 241 PVFSSFSQIGAATNIGPGPGTTAPGMPASSPFGHPSSAPLAAPTFGSSQMKFGVSSVFGN 300

Query: 301 QGSGQPFGSFQAPRFPSSKSPASSVQHRDIDRQSQELLNGMVTPPSVMFEESVGNNKNEN 360
           QGSGQPFGSFQAPRFPSSKSPASSVQHRDIDRQSQELLNGMVTPPSVMFEESVGNNKNEN
Sbjct: 301 QGSGQPFGSFQAPRFPSSKSPASSVQHRDIDRQSQELLNGMVTPPSVMFEESVGNNKNEN 360

Query: 361 QDDSIWLKEKWAIGEIPLDEPPQRHVSHVF 390
           QDDSIWLKEKWAIGEIPLDEPPQRHVSHVF
Sbjct: 361 QDDSIWLKEKWAIGEIPLDEPPQRHVSHVF 390



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.128    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,818,558
Number of extensions: 562797
Number of successful extensions: 1313
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1310
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 287
Effective length of database: 11,657,759
Effective search space: 3345776833
Effective search space used: 3345776833
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 157 (65.1 bits)