Os06g0682900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : (2R)-phospho-3-sulfolactate synthase, ComA family protein.
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Os06g0682900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : (2R)-phospho-3-sulfolactate synthase, ComA family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 163.24 | 0.6 | 8.73 | 1.55 | 2.13 | -3.35 | 0.353 | -2.1 | 0.838 | 7.55 | 28.7 | 10 | -- | -- |
| 169.63 | 0.607 | 8.73 | 1.24 | 2.19 | -3.37 | 0.759 | -- | 0.876 | 7.54 | 30.67 | 5 | -- | -- |
| 163.54 | 0.596 | 8.73 | 1.57 | 2.12 | -3.35 | -- | -2.15 | 0.839 | 7.56 | 28.6 | 9 | -- | -- |
| 170.05 | 0.607 | 8.75 | 1.23 | 2.15 | -3.41 | -- | -- | 0.822 | 7.55 | 30.69 | 5 | -- | -- |
| 397.54 | 0.934 | 8.78 | 1.64 | -- | -3.33 | -- | -2.25 | 0.846 | -- | 27.2 | 5 | -- | -- |
| 320.95 | 0.84 | 8.61 | 1.98 | 2.24 | -- | 0.803 | -- | 1.44 | 9.55 | -- | -- | -- | -- |
| 323.32 | 0.842 | 8.61 | 2.01 | 2.23 | -- | -- | -- | 1.44 | 9.52 | -- | -- | -- | -- |
| 405.84 | 0.938 | 8.82 | 1.26 | -- | -3.24 | -- | -- | 0.773 | -- | 27.97 | 5 | -- | -- |
| 205.21 | 0.667 | 8.8 | -- | 2.18 | -3.91 | -- | -- | 0.588 | 7.18 | 30.43 | 5 | -- | -- |
| 617.3 | 1.16 | 8.67 | 1.99 | -- | -- | -- | -- | 1.44 | -- | -- | -- | -- | -- |
| 429.7 | 0.97 | 8.66 | -- | 2.23 | -- | -- | -- | 1.21 | 9.45 | -- | -- | -- | -- |
| 444.19 | 0.982 | 8.87 | -- | -- | -3.59 | -- | -- | 0.571 | -- | 27.93 | 2 | -- | -- |
| 722.12 | 1.25 | 8.72 | -- | -- | -- | -- | -- | 1.22 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 161.81 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 2 | 162.02 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 3 | 162.27 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 7 | 163.69 | temperature | 15 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 8 | 163.98 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 12 | 164.70 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 13 | 164.94 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 16 | 165.69 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 17 | 165.79 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 18 | 166.07 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 28 | 167.97 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 32 | 169.36 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 34 | 169.95 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 47 | 175.49 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 23 |
| 49 | 176.10 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 52 | 177.04 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 55 | 177.47 | temperature | 15 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 61 | 178.53 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 20 |
| 85 | 180.44 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 19 |
| 142 | 185.29 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 20 |
| 144 | 185.34 | temperature | 20 | 10 | > th | dose dependent | sin | 7 | NA |
| 165 | 186.33 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 18 |
| 168 | 186.41 | temperature | 10 | 10 | > th | dose dependent | sin | 6 | NA |
| 174 | 186.64 | temperature | 30 | 10 | < th | dose dependent | sin | 6 | NA |
| 184 | 187.23 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 194 | 187.76 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 21 |
| 206 | 188.42 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 269 | 192.38 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 281 | 193.07 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 473 | 200.60 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 19 |
| 493 | 201.59 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 511 | 202.53 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 17 |
| 725 | 207.93 | temperature | 25 | 90 | > th | dose independent | rect. | 15 | 23 |
| 751 | 208.50 | temperature | 20 | 90 | > th | dose dependent | rect. | 20 | 15 |
| 772 | 209.01 | temperature | 25 | 90 | < th | dose independent | rect. | 9 | 23 |
| 793 | 209.58 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 803 | 209.80 | temperature | 25 | 90 | > th | dose independent | rect. | 5 | 21 |
| 926 | 212.54 | temperature | 25 | 10 | > th | dose independent | rect. | 5 | 20 |
| 934 | 212.67 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 944 | 212.82 | temperature | 25 | 90 | < th | dose independent | rect. | 7 | 23 |
| 945 | 212.83 | temperature | 25 | 90 | < th | dose independent | rect. | 21 | 23 |
| 949 | 212.91 | temperature | 25 | 90 | > th | dose independent | rect. | 13 | 23 |
| 960 | 213.07 | temperature | 25 | 90 | < th | dose independent | no | NA | NA |
| 982 | 213.43 | temperature | 25 | 90 | < th | dose independent | rect. | 19 | 23 |
| 1000 | 213.71 | temperature | 25 | 90 | < th | dose independent | rect. | 17 | 23 |