BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0682900 Os06g0682900|AK072958
         (302 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G21320.1  | chr4:11340492-11341732 FORWARD LENGTH=287          345   1e-95

>AT4G21320.1 | chr4:11340492-11341732 FORWARD LENGTH=287
          Length = 286

 Score =  345 bits (886), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 164/255 (64%), Positives = 204/255 (80%), Gaps = 2/255 (0%)

Query: 27  RPEKPRRYGVTEMRSPFYAFRPAHHALQEILDSLGPFVDGLKFTGGSHSLMGKELVREIT 86
           RPEKPRRYGVTEMR P Y+   + + LQEI +S+G FVDGLKF+GGS+SL+ K  +++  
Sbjct: 16  RPEKPRRYGVTEMRGPHYSVL-SQNLLQEIFESMGQFVDGLKFSGGSNSLIPKSFIKQAI 74

Query: 87  DLAHKHDIYVSTGDWAEHLLRQGPSFFKQYVEECKALGFDTIELNAGSLKLPEEALLRLV 146
           ++AH+H +YVSTGDWAEH+LR GPS FK YVEECK LGFDTIELNA  L++PEE LLR V
Sbjct: 75  EMAHEHGVYVSTGDWAEHMLRSGPSAFKDYVEECKQLGFDTIELNANLLEVPEETLLRYV 134

Query: 147 RLIKTSGLQAKPLFSVKFDSSDIPPSGDRAFGAYIVPVKQNSERVEDVDLLIRRAERCLE 206
           RLIK  GL+AKP+F+VKF+ SDI P  +RAFG+Y+VP  ++SE VED+DLLIR+AERCLE
Sbjct: 135 RLIKNGGLRAKPMFAVKFNKSDI-PGRNRAFGSYVVPEPRSSEFVEDIDLLIRKAERCLE 193

Query: 207 AGXXXXXXXXXXXCQRADSLRADIVAKIVGRLGLEKTMFEASNPNTSEWFVRRYGPRVNL 266
           AG           C+ ADSLRADI+AK++GRLG+EKTMFEAS+    EWF++RYGP VNL
Sbjct: 194 AGADTIMIDADDVCKYADSLRADIIAKVIGRLGIEKTMFEASDAKLVEWFIKRYGPNVNL 253

Query: 267 FVDHSDVMNLERLRG 281
           +VDHS +M+LE LRG
Sbjct: 254 YVDHSQIMDLECLRG 268



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.139    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,105,961
Number of extensions: 237773
Number of successful extensions: 467
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 465
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 204
Effective length of database: 8,419,801
Effective search space: 1717639404
Effective search space used: 1717639404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 111 (47.4 bits)