BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0682900 Os06g0682900|AK072958
         (302 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0682900  (2R)-phospho-3-sulfolactate synthase, ComA fam...   571   e-163

>Os06g0682900 (2R)-phospho-3-sulfolactate synthase, ComA family protein
          Length = 302

 Score =  571 bits (1471), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 281/302 (93%), Positives = 281/302 (93%)

Query: 1   MAMRRWREDAVALSLRXXXXXXXXXXRPEKPRRYGVTEMRSPFYAFRPAHHALQEILDSL 60
           MAMRRWREDAVALSLR          RPEKPRRYGVTEMRSPFYAFRPAHHALQEILDSL
Sbjct: 1   MAMRRWREDAVALSLRGCGFGDGDDDRPEKPRRYGVTEMRSPFYAFRPAHHALQEILDSL 60

Query: 61  GPFVDGLKFTGGSHSLMGKELVREITDLAHKHDIYVSTGDWAEHLLRQGPSFFKQYVEEC 120
           GPFVDGLKFTGGSHSLMGKELVREITDLAHKHDIYVSTGDWAEHLLRQGPSFFKQYVEEC
Sbjct: 61  GPFVDGLKFTGGSHSLMGKELVREITDLAHKHDIYVSTGDWAEHLLRQGPSFFKQYVEEC 120

Query: 121 KALGFDTIELNAGSLKLPEEALLRLVRLIKTSGLQAKPLFSVKFDSSDIPPSGDRAFGAY 180
           KALGFDTIELNAGSLKLPEEALLRLVRLIKTSGLQAKPLFSVKFDSSDIPPSGDRAFGAY
Sbjct: 121 KALGFDTIELNAGSLKLPEEALLRLVRLIKTSGLQAKPLFSVKFDSSDIPPSGDRAFGAY 180

Query: 181 IVPVKQNSERVEDVDLLIRRAERCLEAGXXXXXXXXXXXCQRADSLRADIVAKIVGRLGL 240
           IVPVKQNSERVEDVDLLIRRAERCLEAG           CQRADSLRADIVAKIVGRLGL
Sbjct: 181 IVPVKQNSERVEDVDLLIRRAERCLEAGADMIMIDADDICQRADSLRADIVAKIVGRLGL 240

Query: 241 EKTMFEASNPNTSEWFVRRYGPRVNLFVDHSDVMNLERLRGFNMRGVCNSPLFGIGSPFF 300
           EKTMFEASNPNTSEWFVRRYGPRVNLFVDHSDVMNLERLRGFNMRGVCNSPLFGIGSPFF
Sbjct: 241 EKTMFEASNPNTSEWFVRRYGPRVNLFVDHSDVMNLERLRGFNMRGVCNSPLFGIGSPFF 300

Query: 301 LM 302
           LM
Sbjct: 301 LM 302



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.139    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,582,807
Number of extensions: 371543
Number of successful extensions: 692
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 692
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 202
Effective length of database: 11,814,401
Effective search space: 2386509002
Effective search space used: 2386509002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 156 (64.7 bits)