Os06g0679100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cdc23 domain containing protein.
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Os06g0679100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cdc23 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 128.81 | 0.533 | 5.95 | 0.099 | 0.748 | -3.11 | 0.817 | -0.378 | 0.414 | 20.7 | 30.91 | 133 | -- | -- |
| 128.95 | 0.529 | 5.95 | 0.0419 | 0.75 | -3.11 | 0.778 | -- | 0.405 | 20.7 | 31.07 | 131 | -- | -- |
| 130.67 | 0.532 | 5.95 | 0.063 | 0.707 | -3.06 | -- | -0.261 | 0.42 | 20.3 | 30.95 | 157 | -- | -- |
| 130.73 | 0.533 | 5.95 | 0.0247 | 0.706 | -3.06 | -- | -- | 0.414 | 20.3 | 31.04 | 157 | -- | -- |
| 146.7 | 0.564 | 5.95 | -0.0791 | -- | -3.4 | -- | 0.228 | 0.357 | -- | 31.56 | 264 | -- | -- |
| 247.39 | 0.737 | 5.84 | 0.757 | 1.37 | -- | 0.412 | -- | 0.951 | 17.6 | -- | -- | -- | -- |
| 247.79 | 0.737 | 5.84 | 0.755 | 1.38 | -- | -- | -- | 0.953 | 17.5 | -- | -- | -- | -- |
| 146.25 | 0.563 | 5.95 | -0.0573 | -- | -3.42 | -- | -- | 0.337 | -- | 31.26 | 272 | -- | -- |
| 130.74 | 0.533 | 5.95 | -- | 0.705 | -3.07 | -- | -- | 0.408 | 20.3 | 31.02 | 157 | -- | -- |
| 346.32 | 0.87 | 5.82 | 0.71 | -- | -- | -- | -- | 0.919 | -- | -- | -- | -- | -- |
| 262.83 | 0.758 | 5.86 | -- | 1.36 | -- | -- | -- | 0.869 | 17.5 | -- | -- | -- | -- |
| 146.33 | 0.563 | 5.95 | -- | -- | -3.39 | -- | -- | 0.351 | -- | 31.25 | 275 | -- | -- |
| 359.62 | 0.885 | 5.83 | -- | -- | -- | -- | -- | 0.841 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 125.43 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 2 | 127.39 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 9 | 130.35 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 11 | 130.53 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 16 | 131.11 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 21 | 131.74 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 18 |
| 22 | 131.82 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 32 | 132.16 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 33 | 132.21 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 45 | 132.47 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 54 | 132.66 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 56 | 132.68 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 5 |
| 82 | 133.03 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 90 | 133.21 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 106 | 133.42 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 183 | 134.51 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 237 | 135.48 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 246 | 135.53 | temperature | 25 | 1440 | < th | dose dependent | rect. | 6 | 23 |
| 247 | 135.54 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 23 |
| 263 | 135.70 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 23 |
| 264 | 135.71 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 322 | 136.42 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 373 | 137.05 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 378 | 137.12 | temperature | 20 | 90 | > th | dose dependent | rect. | 20 | 23 |
| 412 | 137.62 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 9 |
| 464 | 138.10 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 21 |
| 563 | 138.84 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 2 |
| 590 | 139.02 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 8 |
| 629 | 139.27 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 636 | 139.30 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 8 |
| 684 | 139.64 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 711 | 139.76 | temperature | 15 | 1440 | > th | dose dependent | sin | 10 | NA |
| 730 | 139.87 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 950 | 141.27 | temperature | 20 | 10 | > th | dose dependent | rect. | 22 | 23 |