BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0679100 Os06g0679100|J075055C24
         (263 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0679100  Cdc23 domain containing protein                     520   e-148
Os02g0656300  Similar to Anaphase-promoting complex subunit ...   502   e-142

>Os06g0679100 Cdc23 domain containing protein
          Length = 263

 Score =  520 bits (1340), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 251/263 (95%), Positives = 251/263 (95%)

Query: 1   FDCREYRRAAHVLRGQTGRKAVFLRCYALYTAGXXXXXXXXXXXXGSLGKSNAVNQELVA 60
           FDCREYRRAAHVLRGQTGRKAVFLRCYALYTAG            GSLGKSNAVNQELVA
Sbjct: 1   FDCREYRRAAHVLRGQTGRKAVFLRCYALYTAGEKRKEEETVELEGSLGKSNAVNQELVA 60

Query: 61  LERELATHRRTGAIDSFCLYLYGIVLRDKGSEALARTVLVESVNSYPWNWSAWLELQSLC 120
           LERELATHRRTGAIDSFCLYLYGIVLRDKGSEALARTVLVESVNSYPWNWSAWLELQSLC
Sbjct: 61  LERELATHRRTGAIDSFCLYLYGIVLRDKGSEALARTVLVESVNSYPWNWSAWLELQSLC 120

Query: 121 TSSDILNNLNLKNHWMKDFFLASAHLELKMHEEALKRYERLMGVFRCSDYIQAQIATVQY 180
           TSSDILNNLNLKNHWMKDFFLASAHLELKMHEEALKRYERLMGVFRCSDYIQAQIATVQY
Sbjct: 121 TSSDILNNLNLKNHWMKDFFLASAHLELKMHEEALKRYERLMGVFRCSDYIQAQIATVQY 180

Query: 181 SMRDLDEADMIFEELLRTDPFRVDSMDVYSNLLYAKESSTALSFLAHRVFLTDKYRPESC 240
           SMRDLDEADMIFEELLRTDPFRVDSMDVYSNLLYAKESSTALSFLAHRVFLTDKYRPESC
Sbjct: 181 SMRDLDEADMIFEELLRTDPFRVDSMDVYSNLLYAKESSTALSFLAHRVFLTDKYRPESC 240

Query: 241 CIIANYYSLKGQHENQFCTFKEH 263
           CIIANYYSLKGQHENQFCTFKEH
Sbjct: 241 CIIANYYSLKGQHENQFCTFKEH 263



>Os02g0656300 Similar to Anaphase-promoting complex subunit 8-like protein
          Length = 597

 Score =  502 bits (1292), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 242/261 (92%), Positives = 244/261 (93%)

Query: 1   FDCREYRRAAHVLRGQTGRKAVFLRCYALYTAGXXXXXXXXXXXXGSLGKSNAVNQELVA 60
           FDCREYRRAAHVLRGQTGRKAVFLRCYALYTAG            GSLGKSNAVNQELVA
Sbjct: 121 FDCREYRRAAHVLRGQTGRKAVFLRCYALYTAGEKRKEEETVELEGSLGKSNAVNQELVA 180

Query: 61  LERELATHRRTGAIDSFCLYLYGIVLRDKGSEALARTVLVESVNSYPWNWSAWLELQSLC 120
           LERELATHRRTGAIDSFCLYLYGIVLRDKGSEALARTVLVESVNSYPWNWSAWLELQSLC
Sbjct: 181 LERELATHRRTGAIDSFCLYLYGIVLRDKGSEALARTVLVESVNSYPWNWSAWLELQSLC 240

Query: 121 TSSDILNNLNLKNHWMKDFFLASAHLELKMHEEALKRYERLMGVFRCSDYIQAQIATVQY 180
           TSSDILNNLN+KNHWMKDFFLASAHLELKMHEEALKRYERLMGVFRCSDYIQAQIATVQY
Sbjct: 241 TSSDILNNLNIKNHWMKDFFLASAHLELKMHEEALKRYERLMGVFRCSDYIQAQIATVQY 300

Query: 181 SMRDLDEADMIFEELLRTDPFRVDSMDVYSNLLYAKESSTALSFLAHRVFLTDKYRPESC 240
           SMRDLDEADMIFEELLRTDPFRVDSMDVYSNLLYAKESSTALSFLAHRVFLTDKYRPESC
Sbjct: 301 SMRDLDEADMIFEELLRTDPFRVDSMDVYSNLLYAKESSTALSFLAHRVFLTDKYRPESC 360

Query: 241 CIIANYYSLKGQHENQFCTFK 261
           CIIANYYSLKGQHE     F+
Sbjct: 361 CIIANYYSLKGQHEKSVLYFQ 381



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.135    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,527,009
Number of extensions: 260788
Number of successful extensions: 725
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 725
Number of HSP's successfully gapped: 2
Length of query: 263
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 164
Effective length of database: 11,866,615
Effective search space: 1946124860
Effective search space used: 1946124860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 155 (64.3 bits)