BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0679100 Os06g0679100|J075055C24
         (263 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G48150.1  | chr3:17779800-17782565 REVERSE LENGTH=580          372   e-104
AT2G20000.1  | chr2:8632324-8636900 REVERSE LENGTH=745             61   5e-10
AT3G16320.1  | chr3:5529534-5534465 FORWARD LENGTH=718             60   1e-09

>AT3G48150.1 | chr3:17779800-17782565 REVERSE LENGTH=580
          Length = 579

 Score =  372 bits (956), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 172/261 (65%), Positives = 212/261 (81%)

Query: 1   FDCREYRRAAHVLRGQTGRKAVFLRCYALYTAGXXXXXXXXXXXXGSLGKSNAVNQELVA 60
           FDCREYRRA+H+LR Q  +K++FLR YALY AG            G LGKS+A+N+ELV+
Sbjct: 103 FDCREYRRASHMLRDQVSKKSLFLRYYALYLAGEKRKEEEMIELEGPLGKSDAINRELVS 162

Query: 61  LERELATHRRTGAIDSFCLYLYGIVLRDKGSEALARTVLVESVNSYPWNWSAWLELQSLC 120
           LER+L+  RRTGAIDSF LYLYG+VL++KG+E+LAR  LVESVNSYPWNWSAW ELQSLC
Sbjct: 163 LERDLSALRRTGAIDSFGLYLYGVVLKEKGNESLARASLVESVNSYPWNWSAWSELQSLC 222

Query: 121 TSSDILNNLNLKNHWMKDFFLASAHLELKMHEEALKRYERLMGVFRCSDYIQAQIATVQY 180
           TS +ILN+LNL NHWMK+FFL +A+ EL+MH E+L +YE L G+F  S+YIQAQ A  QY
Sbjct: 223 TSIEILNSLNLNNHWMKEFFLGNAYQELRMHTESLAKYEYLQGIFSFSNYIQAQTAKAQY 282

Query: 181 SMRDLDEADMIFEELLRTDPFRVDSMDVYSNLLYAKESSTALSFLAHRVFLTDKYRPESC 240
           S+R+ D+ +++FEELLR DP+RV+ MD+YSN+LYAKE+  ALS+LAH+VFLTDKYRPESC
Sbjct: 283 SLREFDQVEIMFEELLRNDPYRVEDMDLYSNVLYAKEACAALSYLAHKVFLTDKYRPESC 342

Query: 241 CIIANYYSLKGQHENQFCTFK 261
           CII NYYSLKGQHE     F+
Sbjct: 343 CIIGNYYSLKGQHEKAVMYFR 363



>AT2G20000.1 | chr2:8632324-8636900 REVERSE LENGTH=745
          Length = 744

 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 55/109 (50%)

Query: 152 EEALKRYERLMGVFRCSDYIQAQIATVQYSMRDLDEADMIFEELLRTDPFRVDSMDVYSN 211
           +EAL  Y +L      + ++ +Q+    + + D  EA+  F       P+ ++ MD+YS 
Sbjct: 433 QEALDTYMKLPHKHYNTGWVLSQVGKAYFELIDYLEAEKAFRLARLASPYCLEGMDIYST 492

Query: 212 LLYAKESSTALSFLAHRVFLTDKYRPESCCIIANYYSLKGQHENQFCTF 260
           +LY  +    LS+LA  +  TD+  P+S C + N YSL+  HE     F
Sbjct: 493 VLYHLKEDMKLSYLAQELISTDRLAPQSWCAMGNCYSLQKDHETALKNF 541



>AT3G16320.1 | chr3:5529534-5534465 FORWARD LENGTH=718
          Length = 717

 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 2/124 (1%)

Query: 140 FLASAHLELKMH--EEALKRYERLMGVFRCSDYIQAQIATVQYSMRDLDEADMIFEELLR 197
            L   H  L M+  +EAL  Y++L      + ++  Q+    + ++D   AD  F    +
Sbjct: 390 ILGDGHRHLHMYKCQEALLAYQKLSQKQYNTHWVLMQVGKAYFELQDYFNADSSFTLAHQ 449

Query: 198 TDPFRVDSMDVYSNLLYAKESSTALSFLAHRVFLTDKYRPESCCIIANYYSLKGQHENQF 257
             P+ ++ MD YS +LY  +    L +LA  +   D+  PES C + N YSL+  H+   
Sbjct: 450 KYPYALEGMDTYSTVLYHLKEEMRLGYLAQELISVDRLSPESWCAVGNCYSLRKDHDTAL 509

Query: 258 CTFK 261
             F+
Sbjct: 510 KMFQ 513



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.135    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,076,946
Number of extensions: 185895
Number of successful extensions: 577
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 578
Number of HSP's successfully gapped: 3
Length of query: 263
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 166
Effective length of database: 8,447,217
Effective search space: 1402238022
Effective search space used: 1402238022
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 111 (47.4 bits)