Os06g0662900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pollen allergen/expansin, C-terminal domain containing protein.
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Os06g0662900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Pollen allergen/expansin, C-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 186.46 | 0.642 | 2.89 | 0.262 | 0.0841 | 0.138 | 1.31 | 1.73 | -0.122 | 4.07 | 78 | 35 | -- | -- |
| 196.81 | 0.658 | 2.9 | 0.173 | 0.115 | 0.0833 | 0.682 | -- | -0.145 | 9.23 | 78 | 35 | -- | -- |
| 189.98 | 0.642 | 2.89 | 0.251 | 0.0952 | 0.144 | -- | 1.32 | -0.114 | 4.03 | 78 | 40 | -- | -- |
| 197.34 | 0.654 | 2.91 | 0.262 | 0.162 | 0.142 | -- | -- | -0.172 | 9.22 | 88 | 107 | -- | -- |
| 190.15 | 0.642 | 2.9 | 0.253 | -- | 0.109 | -- | 1.22 | -0.119 | -- | 77 | 37 | -- | -- |
| 197.35 | 0.659 | 2.9 | 0.181 | 0.154 | -- | 0.64 | -- | -0.147 | 10.2 | -- | -- | -- | -- |
| 198.96 | 0.661 | 2.9 | 0.208 | 0.151 | -- | -- | -- | -0.145 | 10.8 | -- | -- | -- | -- |
| 198.57 | 0.656 | 2.91 | 0.228 | -- | 0.143 | -- | -- | -0.166 | -- | 87.34 | 110 | -- | -- |
| 198.55 | 0.656 | 2.91 | -- | 0.165 | 0.137 | -- | -- | -0.191 | 8.69 | 88 | 111 | -- | -- |
| 200.38 | 0.661 | 2.91 | 0.204 | -- | -- | -- | -- | -0.146 | -- | -- | -- | -- | -- |
| 200.1 | 0.662 | 2.91 | -- | 0.15 | -- | -- | -- | -0.168 | 10.7 | -- | -- | -- | -- |
| 199.9 | 0.658 | 2.92 | -- | -- | 0.129 | -- | -- | -0.189 | -- | 86.06 | 94 | -- | -- |
| 201.48 | 0.663 | 2.91 | -- | -- | -- | -- | -- | -0.169 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 171.46 | temperature | 20 | 10 | < th | dose independent | rect. | 8 | 9 |
| 15 | 174.85 | temperature | 20 | 90 | < th | dose independent | rect. | 6 | 13 |
| 22 | 175.38 | humidity | 80 | 90 | < th | dose dependent | rect. | 6 | 1 |
| 28 | 175.79 | humidity | 80 | 90 | < th | dose independent | rect. | 6 | 1 |
| 29 | 175.82 | temperature | 20 | 90 | < th | dose independent | rect. | 6 | 1 |
| 31 | 175.95 | radiation | 30 | 90 | > th | dose independent | rect. | 8 | 1 |
| 52 | 176.89 | temperature | 20 | 90 | < th | dose independent | rect. | 6 | 6 |
| 57 | 176.98 | wind | 5 | 10 | > th | dose independent | rect. | 1 | 8 |
| 62 | 177.08 | wind | 5 | 10 | > th | dose independent | rect. | 7 | 2 |
| 64 | 177.09 | temperature | 20 | 90 | < th | dose dependent | rect. | 6 | 1 |
| 111 | 177.48 | temperature | 20 | 90 | < th | dose dependent | rect. | 6 | 13 |
| 112 | 177.58 | temperature | 20 | 10 | < th | dose dependent | rect. | 7 | 10 |
| 113 | 177.62 | radiation | 30 | 90 | > th | dose independent | sin | 11 | NA |
| 132 | 177.70 | temperature | 20 | 90 | < th | dose dependent | rect. | 6 | 10 |
| 140 | 177.93 | wind | 5 | 10 | > th | dose dependent | rect. | 2 | 7 |
| 142 | 177.94 | wind | 5 | 10 | > th | dose dependent | rect. | 4 | 5 |
| 147 | 178.00 | wind | 5 | 10 | > th | dose dependent | rect. | 7 | 2 |
| 151 | 178.18 | temperature | 20 | 10 | < th | dose independent | rect. | 6 | 3 |
| 158 | 178.41 | temperature | 20 | 90 | < th | dose dependent | rect. | 6 | 5 |
| 190 | 179.20 | wind | 3 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 239 | 179.49 | radiation | 40 | 30 | < th | dose independent | sin | 11 | NA |
| 268 | 179.85 | temperature | 20 | 10 | < th | dose dependent | rect. | 7 | 5 |
| 277 | 179.90 | temperature | 20 | 10 | < th | dose independent | rect. | 8 | 2 |
| 283 | 179.90 | temperature | 20 | 10 | < th | dose dependent | rect. | 8 | 2 |
| 413 | 181.58 | humidity | 80 | 90 | < th | dose independent | rect. | 6 | 5 |
| 414 | 181.63 | humidity | 80 | 90 | < th | dose independent | rect. | 6 | 3 |
| 422 | 181.95 | radiation | 20 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 511 | 183.03 | radiation | 30 | 10 | > th | dose dependent | rect. | 10 | 1 |
| 514 | 183.13 | temperature | 25 | 30 | > th | dose independent | rect. | 9 | 1 |
| 515 | 183.18 | radiation | 20 | 90 | > th | dose dependent | rect. | 6 | 4 |
| 558 | 183.41 | wind | 1 | 270 | < th | dose dependent | rect. | 6 | 1 |
| 570 | 183.68 | radiation | 20 | 90 | > th | dose dependent | sin | 11 | NA |
| 572 | 183.75 | wind | 1 | 90 | < th | dose dependent | rect. | 9 | 1 |
| 578 | 183.86 | temperature | 20 | 10 | < th | dose independent | rect. | 12 | 4 |
| 596 | 183.90 | humidity | 80 | 90 | < th | dose independent | rect. | 22 | 13 |
| 597 | 183.91 | radiation | 1 | 90 | < th | dose independent | rect. | 13 | 2 |
| 600 | 183.91 | radiation | 1 | 90 | < th | dose dependent | rect. | 13 | 2 |
| 606 | 184.03 | temperature | 20 | 90 | < th | dose independent | rect. | 12 | 3 |
| 608 | 184.05 | wind | 1 | 90 | < th | dose independent | rect. | 8 | 2 |
| 610 | 184.07 | temperature | 20 | 270 | < th | dose independent | rect. | 12 | 1 |
| 619 | 184.15 | temperature | 20 | 270 | < th | dose dependent | rect. | 12 | 1 |
| 732 | 185.06 | humidity | 60 | 90 | < th | dose dependent | rect. | 9 | 1 |
| 790 | 185.37 | radiation | 40 | 90 | < th | dose dependent | sin | 9 | NA |
| 797 | 185.44 | humidity | 60 | 90 | < th | dose independent | rect. | 9 | 1 |
| 815 | 185.48 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 7 | 3 |
| 818 | 185.51 | humidity | 80 | 90 | < th | dose independent | sin | 6 | NA |
| 819 | 185.52 | radiation | 1 | 90 | < th | dose independent | rect. | 8 | 7 |
| 820 | 185.52 | radiation | 1 | 90 | < th | dose dependent | rect. | 8 | 7 |
| 849 | 185.59 | humidity | 80 | 90 | < th | dose independent | rect. | 19 | 16 |
| 891 | 185.81 | humidity | 70 | 10 | > th | dose independent | rect. | 9 | 22 |
| 914 | 185.95 | temperature | 20 | 270 | < th | dose independent | sin | 0 | NA |